RNA id: AMCG00018276



Basic Information


Item Value
RNA id AMCG00018276
length 606
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00018276
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6306395 ~ 6309843 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCAAATGACCAGAAGTCCACCTTCTTCCAGTTCGGGGCTTCCATTCAACAAGAAGCCCTCCTGATGCTCAATATAATGGAGGAATACGACTGGCATGTCTTCTCCATAGTGACTAGCAAATTCCCGGGCTACCAGGATTTCATCAGCATCCTCAAGAGCACGGTGGACAACAGCTTCGTGGGATGGGATTTACAGAACATGATCACGCTGGATGCGGTCGCTGGGGACACCAGGACCCAGATCCAGCTGAAGAAGATCCAGTCCTCTGTGATCTTGCTGTATTGTTCCAAAGACGAGGCCGCGTACATTCTGGAAGAGGCGCGCTCTTTGGGTTTGACAGGGTATGGCTTCAACTGGATCGTTCCCAGCCTGACCACTGGGAACACCGAAATCACCCCTGGCGAGTTCCCGTCTGGAATGATCTCGGTGTCCTACGACGAGTGGGACTACCCTCTGGAGGCCCGGGTGCGAGACGGCCTTGGGATTATAACCACAGCGGCGGTCTCCATGCTGGAAGAGTTTGGTGACATACCGGAGGCAAAGACCAGCTGCTTTGGgcaaatggagaaaacaaaactgcctCCCAGTGCATTACACAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144484 lncRNA upstream 145907 6157959 ~ 6160488 (+) False AMCG00018272
TU144447 lncRNA upstream 259861 6046030 ~ 6046534 (+) True G115331
TU144281 lncRNA upstream 961448 5344487 ~ 5344947 (+) True G115201
TU144260 lncRNA upstream 988470 5316453 ~ 5317925 (+) True G115188
TU144143 lncRNA upstream 1205457 5095148 ~ 5100938 (+) True G115099
TU144512 lncRNA downstream 215876 6525719 ~ 6588409 (+) True G115379
TU144557 lncRNA downstream 308335 6618178 ~ 6620097 (+) True G115419
TU144586 lncRNA downstream 344279 6654122 ~ 6678353 (+) True G115439
TU144589 lncRNA downstream 348690 6658533 ~ 6667223 (+) True G115441
TU144612 lncRNA downstream 400639 6710482 ~ 6747438 (+) True AMCG00018280
AMCG00018277 mRNA upstream 56855 6249124 ~ 6249540 (+) True AMCG00018277
AMCG00018275 mRNA upstream 87179 6216225 ~ 6219216 (+) True AMCG00018275
AMCG00018272 mRNA upstream 145779 6155488 ~ 6160616 (+) True AMCG00018272
AMCG00018273 mRNA upstream 180626 6125500 ~ 6125769 (+) True AMCG00018273
AMCG00018269 mRNA upstream 244814 6060961 ~ 6061581 (+) True AMCG00018269
AMCG00018278 mRNA downstream 29608 6339451 ~ 6365240 (+) True AMCG00018278
AMCG00018279 mRNA downstream 289755 6599598 ~ 6617618 (+) True AMCG00018279
AMCG00018282 mRNA downstream 378794 6688637 ~ 6704131 (+) True AMCG00018282
AMCG00018280 mRNA downstream 400700 6710543 ~ 6713457 (+) False AMCG00018280
AMCG00018281 mRNA downstream 421767 6731610 ~ 6732494 (+) True AMCG00018281
TU144414 other upstream 355378 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 1542490 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 1702406 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 2113281 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 3658621 2640846 ~ 2647774 (+) True G114551
TU144781 other downstream 1583784 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 1809935 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 2383521 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 2889814 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 2929968 9239811 ~ 9241815 (+) True AMCG00018360

Expression Profile