RNA id: AMCG00018277


Basic Information

Item Value
RNA id AMCG00018277
length 417
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00018277
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6249124 ~ 6249540 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTCGACCAACATGGGGAACTTGGGGTTGCTACTCCTGATGCTACCAGCTCTTCTGTCTCACGTTGGCTACGTCCATGGACTGGAGAAGGTCCCCATCCTGAACATTGCTGTCCTCTTGGGGCGGACCCGCTACATCTCTGACAGAGATATCCGGGCTCTGTGGAACAAGGATGACCCCATTGATGTCAACGTGGTGACACTTTTGGTGAATGAGACTGACCCCAAGAGTATCATAAATCATGTTTGTGACCTCATGTCTGGGACCAAGATCCATGGGGTGGTTTTCGGAGATGGCACAGACCAGGAGGCAATTGCACAGATTTTggattttatttcttcccagaCTTTCATACCCATCTTGGGCATCCATGGTGGATCGTCCATGATCATGGCAGACAAGGTAAGAATCTAA

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144484 lncRNA upstream 88636 6157959 ~ 6160488 (+) False AMCG00018272
TU144447 lncRNA upstream 202590 6046030 ~ 6046534 (+) True G115331
TU144281 lncRNA upstream 904177 5344487 ~ 5344947 (+) True G115201
TU144260 lncRNA upstream 931199 5316453 ~ 5317925 (+) True G115188
TU144143 lncRNA upstream 1148186 5095148 ~ 5100938 (+) True G115099
TU144512 lncRNA downstream 276179 6525719 ~ 6588409 (+) True G115379
TU144557 lncRNA downstream 368638 6618178 ~ 6620097 (+) True G115419
TU144586 lncRNA downstream 404582 6654122 ~ 6678353 (+) True G115439
TU144589 lncRNA downstream 408993 6658533 ~ 6667223 (+) True G115441
TU144612 lncRNA downstream 460942 6710482 ~ 6747438 (+) True AMCG00018280
AMCG00018275 mRNA upstream 29908 6216225 ~ 6219216 (+) True AMCG00018275
AMCG00018272 mRNA upstream 88508 6155488 ~ 6160616 (+) True AMCG00018272
AMCG00018273 mRNA upstream 123355 6125500 ~ 6125769 (+) True AMCG00018273
AMCG00018269 mRNA upstream 187543 6060961 ~ 6061581 (+) True AMCG00018269
AMCG00018270 mRNA upstream 208945 6036080 ~ 6040179 (+) True AMCG00018270
AMCG00018276 mRNA downstream 56855 6306395 ~ 6309843 (+) True AMCG00018276
AMCG00018278 mRNA downstream 89911 6339451 ~ 6365240 (+) True AMCG00018278
AMCG00018279 mRNA downstream 350058 6599598 ~ 6617618 (+) True AMCG00018279
AMCG00018282 mRNA downstream 439097 6688637 ~ 6704131 (+) True AMCG00018282
AMCG00018280 mRNA downstream 461003 6710543 ~ 6713457 (+) False AMCG00018280
TU144414 other upstream 298107 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 1485219 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 1645135 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 2056010 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 3601350 2640846 ~ 2647774 (+) True G114551
TU144781 other downstream 1644087 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 1870238 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 2443824 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 2950117 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 2990271 9239811 ~ 9241815 (+) True AMCG00018360

Expression Profile