RNA id: TU144612


Basic Information

Item Value
RNA id TU144612
length 2019
lncRNA type read_through
GC content 0.42
exon number 5
gene id AMCG00018280
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6710482 ~ 6747438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATCAAGTGGAGTGAACACCTTATAAAGCCCAAGCTTCAGCCAGGACCAGCCCAGAGCAGCAACcagacacactggacacaggcATTCGGATTGGCAGCTTCCTCTGATCTTCCAAGACAACTCTCTGCCTAGATCGTTGAGACGATGAACATCACTACAAACACCTCcaaccccaccacccccacccatGTCACCGGGGGGGCCACAACTCCAAGGAAGGGACCTCCCAAATTCAAGCAAAGGCAGACCCGACAGTTCAAGAGCAAGCCCCCAAAGAAAGGAATTAAGGGATTTGGTGATGACATTCCTGGAATGGAGGGTCTGGGAACAGATATTACGGTCATCTGCCCCTGGGAAGCATTCAGCCATTTGGAGCTACATGAGCTGGCACAGTTTGGAATCATCTGAACCAGCACTTAGTATCCAGAAGAGCCTCTATTACTCTGCAGGACCTGACTTCACCCCCTAGACAGCTGGACACacgtttgtttttagttttttttctactGCACCTGACTCTAGCAAACTAGCAAAGTAGCTCTCCTTGAAATGTACCTACGACGGAGTGTCCGGTGGCAAAGTGTGGGAGTTGAAAATGGGCTTGACAAAACGTCAGGCCGAGGAGAAAGTTACAAAAAGTGTGGGGCCGTGTGGTGCTAAGATAAGAAGAGAACCAAAGGctagagacaaaaataaaaacccttcGAGATTCCCGAAGGAAAGAGCCTATCCTAATAACCAAAGAATATCCTTTGAACAACTCATTTTCTGTTATGTTTACAAAGCGCCACCAGGCATTCAAATACAGTACACAGTCACACTATTTCATGGGAATCTTAAAGGgtttttcctgtttgttgttttgttttttgtaagggAAACTATGTGATGCtcatgtctttttaaaatcctgtaCATCCCTGTTACTGTAATGAAATCTCTGGATGCACACagattactgttatttatttattttagctatGGTGAGCTGTTGTGTATgagaaatctttattttatttttttgcatgtcTGTAAATGCACTATATATGCCATGTAATTCAGTCACAATTATATTTAGATAGTGTAGATGAGAGAAGAGATTGGCTTTAGCAGAAATATAGTAAATGCAATGCCCTAGTGCCTACCCCTAGCTGTAAACTGTTCTCTCAATGTTCTCTCTCCTCATATTGCATACTTTATTGTAacaattttcacaaaacattctCGTTATCTCTTATAAAACTAACTTATCTTTGATTTCACGTTTACTGTCTTAGAACTTGTAGAAGAACACAAAACCCCCCACTAAAAATCACTGTACTCACTTCTAAACTGTCCAATCTACTCCGTTCCTTGTTGTGTCTTTTTGTCCATCAATAAAGTCTGTCTTCTTTTACTTCACAATTGCTTCCCTTCTTTTTCTACTACTTCGATTCCTCAAACATCCATTATATCATGCTCCATACCCTGCACTTCCCAGAAACTGCATATGTCTGTAGACTGCCTGACCCTCCTCACTCCACTCCAGATGCATGCTATTGTTTCTTGGAAATTAGCTCCTGACCTCTTCCTTCCCTGTCTTCCTAAACCTCTTGTCCTATGTTTTAATTAGCTCCCTAATCTGTAACTAGTGACATGTGGAAGGAGGGGTGGTCATGCTGTTTGCTGGGGCCCCATCTTGTCTGCTCATAAATTGGATTAGATTTCACTAGGAGCTCAGGACAGCCGACCTAGAAGATTGAAAGAAACCAATAGCATAGAATTACCAGGGATTTGGAAAAGTAGATGTCTTAGTGAGTTAACGTCTAAGCTTTCCCGGATAGCCGCTCTCGGATCCGATTGAGGTCACATGTGGAAACCGAGTGACAGTCAATTACTGTGTCTGCGCAATGGAATTTCAATCTGATTTCCATGGCTGCTAAATAACTTTATTGCATCAGCGTACAAGCGCAGTCAACCGCACAGCTTTTAATGGCAATGTTTACTTCTTCATAAGCTATTATGGAAACATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144586 lncRNA upstream 32129 6654122 ~ 6678353 (+) True G115439
TU144589 lncRNA upstream 43259 6658533 ~ 6667223 (+) True G115441
TU144557 lncRNA upstream 90385 6618178 ~ 6620097 (+) True G115419
TU144512 lncRNA upstream 122073 6525719 ~ 6588409 (+) True G115379
TU144484 lncRNA upstream 549994 6157959 ~ 6160488 (+) False AMCG00018272
TU144635 lncRNA downstream 24994 6772432 ~ 6773263 (+) True G115481
TU144669 lncRNA downstream 81650 6829088 ~ 6833312 (+) True G115511
TU144677 lncRNA downstream 90268 6837706 ~ 6838861 (+) True G115514
TU144712 lncRNA downstream 338136 7085574 ~ 7086966 (+) True G115535
TU144737 lncRNA downstream 973169 7720607 ~ 7720964 (+) True G115560
AMCG00018282 mRNA upstream 6351 6688637 ~ 6704131 (+) True AMCG00018282
AMCG00018279 mRNA upstream 92864 6599598 ~ 6617618 (+) True AMCG00018279
AMCG00018278 mRNA upstream 345242 6339451 ~ 6365240 (+) True AMCG00018278
AMCG00018276 mRNA upstream 400639 6306395 ~ 6309843 (+) True AMCG00018276
AMCG00018277 mRNA upstream 460942 6249124 ~ 6249540 (+) True AMCG00018277
AMCG00018295 mRNA downstream 37812 6785250 ~ 6790463 (+) True AMCG00018295
AMCG00018297 mRNA downstream 44616 6792054 ~ 6798225 (+) True AMCG00018297
AMCG00018296 mRNA downstream 67996 6815434 ~ 6818771 (+) True AMCG00018296
AMCG00018294 mRNA downstream 80253 6827691 ~ 6828740 (+) True AMCG00018294
AMCG00018300 mRNA downstream 136497 6883935 ~ 6899668 (+) True AMCG00018300
TU144414 other upstream 759465 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 1946577 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 2106493 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 2517368 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 4062708 2640846 ~ 2647774 (+) True G114551
TU144781 other downstream 1146189 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 1372340 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 1945926 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 2452219 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 2492373 9239811 ~ 9241815 (+) True AMCG00018360

Expression Profile