RNA id: AMCG00018289


Basic Information

Item Value
RNA id AMCG00018289
length 4522
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00018289
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6128713 ~ 6155791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATTGTGGTCGCAGTGATGAAGCCAGCGGTGTTGCACTCAAATGGGTCCGAGTTGGAGCTGAAGTGCATCTGAGCAGGAAACAGCCGCAGCATCACCAGCTGCTCAGGACGACCTTGGACCATGTGAAGTGGACACTCGGCCATGCGTCCTCGGGGGAGATCCAGGGTTTGCTCACTGACTTGCTGGAGGCTGGCATCCTCTCCAAGGACTACTATCTGTGCCTCACGAAGGAGAAAGATGCCGACGACCTTGCTAGAAGGATCTCTTTACCTGTGTGGGAGAAATGGAATATGTGCCAAAGCAAGATTCACGCGACGAGCCGCAGCTCTGCGCCTCCAGAGCCAGAGATCAGCATCCCCTCCATACACACGACCTCAGTCCATGTGGATGCCTCGGCTGCAGATGATGAGGGGAACCAACTGCCTCTGGCAACAAATTTTATGGACTTACTGTGTTCCCTGGACCCTGAGACCAGCAGCCTGTGGGAGGACTGCAATTCTCAGAGCTCCTACCCACTGGAGGATAGAGAAAACATAGGTGAAATCGAGACAAGCCCAGCGACAGCAGAAGCAGACAGTTCAGACGCGCCATGCCatgaaacaaaagtgaaaagtaCCAAGCTAGGAAAACGGGATGGCCCAGCAGTCCAGGTGTTTCAAACATTCACTGCTCTTCCACCGCAAGTTATTAACATCCCCGTAGGCAACACTGTCAATCCTGGGGGGGCTACCTATGTTTGGGTCCCTCCTGCTTCACTGCCCTCACCCAAGCCTCAGAATCCGCCAAGCTCACCCGAGCCAGGGACCGTTGTGTCTGCAGACCTTGCGAATGTCAACCACGCACTTCTCAATTCCTCTTCGGATTCAATTAGCGCATCACTCTCTCCATCATCAGCCTCTCCTCAGTCTTCCACAACAGAATCTGGATTATCACCGCCTCCTCCTCAACCGGTTCAGACCCCTGAAAAACCAAAATGTGTTGAAGACTACATTGAATCCCTCAAGTCTTTCATGCTTGACAACTGCCAACTTATGAGTATGGAGACTGAAATCGCCCTGGAGAGACTGTATGTGGATGTGCCTTTGGTGCAGAGGCAGATCAAGACAAAGCCAGGCAAGCACGGGAACAAGTATCTGGAGAAAGAGCTAGTCATCTGTGATATAGCAGAGACAAGGAAATTTGCGATACAGAGAAATGAACTTTTTGAGGATACAGACCAGAAACCAGCCAAGGTGATTGCTTTGCTTGGAAAGGCTGGGATGGGCAAGAGCACATTCATCCAGAAGCTTTGCCAGGACTGGGCAAATGGAGACTATCAGCGCTTTGAGTTTGTCTTCTCCTTTGAGAGCAAGAGACTGAATGTGCCAGGGGAGACATTTAGCCTGAGGAGCTTGCTGTTTGACCCTCTCACATCCCCACCTGGCACAAATGCCCACAAGGTCTTCAGATACATTCTTGACAACCCCCAAAAGGTGTTGATCATATTTGATGGTTTTGATGACTTTCAGGACAGCGAAGGACTTCTACATAATCCTGCTACCAGTCACACAAAAGCAACCTACAGCATTAAACAGCTCTTTTCGGGTCTGTTTCAGAAGAAGTTGCTTGCTGGAAGTACACTATTAATTGCTGCCAGACCGAAAGAGGTTTTGAACCAGTTTTTGGGCAAAGTCAACAAAATTGTAGAGTTGTGTGGCTTTTCAGAAGAAGAGATAGAGTTGTACATGGCAAGGTATTTTAATGGTACCTCATACAGTGACGGAGGCTGGAAGACAGTGAAGAACAATAGATTTCTATTTAGTCTATGTTATAATCCTTTGATCTGCAGGTTTGTTTGCTTCCTCCTTGAACATGTGGATGAGAATCAAAGCTTACCGTCTACACTTACACATCTCTACCAACAGGTGCTTCATTATAAATTACACATGAATTTGCCTGAAGCAGATACTTCAAagaagcaacagcaacaacatatTCCAAAGCTAGGGGCCTTGGCTTGGGCGGGTGTGAAGAATCACACCTGTCTCTTGAACCAAGAGGACTTGGCCTCCACAGAACTGAGAGAGTTTGGACTGAGTGGTGgtgtttttattccatttagCTTGAGACACAGCAATGGTGAGGAACAGTTTGGCCATGGATTTGCACATTTGCTCATGCAGAATTTCTTGGCTGCTTTGTATATCACAATGTCCAAACAACTGACTGATAAGGGCCTTGTCAACCAAATGGTGCtccagcaaaagaaaaagaagcccCAGAGTGAGTGGCTGGACGTGACCCGATGGTTCATGATGGGGCTCCTCTTCCAGAAAATACCTCCCTTTCTGGACGGCTTTCCTGACGGCACTGTCAACACTATGGCTAAGAGGAATGCTATGGAAGACTACTTGAAAAAGATGAACCCCAGCGATCTGAATGGCAACAGGCTGCTGGAGCTCTGCCACTGTGTCTATGAGAGTCAAAACATGAAACTCATTAAAGACCTGGTGCAGAAATTACCTGAAAAGATATCTGGAGCCCAGCTCACCCCACCGGATGTTTTTGTCCTGCATTACTTCCTGAAGAAAGTCAAGGAAACCACAAAGACCTTCTCCGTTGATCTGCAGGAATCCGGCATCAACCTCTGTGGCCTGAAGGAGCTGGTGGGGCTGAAGTGTGTCACGTCTTTCAGGGCTTCTATATCCGATACGATAAGCCTGTGGGAGCATTTGCAGCACACCGGGGAAAAGGAGCTATTAAAGAAAGCAGTGGCCAAGTTCACCATCAACCCTTTCAAGGCAAAACGGATCACTGATGTGGAAAACCTGGCTCTCCTTGTTCAAATCTACAGACAGAAAAAGCTTATCCATTGTGACTCTGGTGATCCTGAGTCCAACCTGGATGAAGATACGTTCCACATTCCAGCTGTGGAGAACCTTCACGATCTGGAATTTGCGTTGGGCCCACAGAACGGATCTTTGGGTTTTCTAGGCCTGGTGGAATTTCTTCCCTCGTTACAGTGGCTAAAACACTTGGACCTGGAATCGCTGACTGACAATAAAATAGGAGACATGGAGGCAGAGAAATTGGCAGAAGTGCTGCCAGCGCTATCATCACTTGAGACTCTGAATCTGTCCCAAAACTGCATTGGAGATAAAGGAGCAGAGAAACTGGCCCAGGCCCTTCCCTCTCTGATGTCACTAAGGAGTCTCAGCTTGTACAGTAACCTAATCGGTGACAGTGGAGCAGAGAATGTGGCAAAAGTTCTCCCAGAAATGAAGTCTCTCATGGATCTAAATGTGAAATATAACAAGATCACAGATGTTGGGGCGCTCAAGCTAAGTGAAAGCCTGAAAGGTTGTCCATGGATAAAAAGCATTGCAATGTGGAACGAGTCGATCCCACACGGGGTTCTAGAACACCTAAAGCAACAGGACTCTAGAATCAACACGCTCTAGAGAGGTTACCCTCCATCCAGAAACACACCTGCtgagagaaaaggaagaaagcaCTGCAGCACCTTTTTACAGAaggctttttcattttcagggcTTATTTCATATGAATATGGTggtttttttatgattgttatttttatgattttattttttcaagtttaATTGGATTTATAACCATTCACTACAACAGAATTGTACATGCAGaattcattgtttctgtatgtctcTGACTGTGTTTTACACTAATTTCTGTTCCCAGTTCATTTCAAACTGACCTCTTTATTATCCTGCTTTctatgtacaaatacaaaatgactcTTCACACTTACAATTGAACAATCACTGGACTCTATTTTCATCAACTTGAGGCATTTTGCTATTAAGAAACTTGACTTGGcaccggattaaatcaaaactttgacccaacccaaacctgtacatcatagcggttacatttctgattaggagAAAGTGGCGTCTAACTAAAAacgaagctgcaactgagtacagttctgtagttttctgttagcaggtgggtcaaagttttgatttgctgCCAccaaggctgggattaaatggttttgaaaataGTCCTTCACACaagcaataaaatatttaatttaaaaaaacattaagctgCTTTATCAGTATTATACTGAAACTATAGCAAATTATCTGCACTAgaatttgattttgttaatttggcATATAACTCACTTAAGCACAATTATAAGTCCAGctataaaacaatgcaatgtgtAACTAGTTTACTTTTTTAGACACGCATCGTGACtagaaaaacatgtaatggAAGAGATTTTAAGAGACCCCATTTAGTTTCTGAGTAACATGTGATTCATAGTTGAAGAAAAGGACGGGGGGACATTTCATTGTAAAACTATATTACTTTGTAAAGAGTAATGTAAAGATTTGAgagaattttatttttagtaagtTTTGTACTGTTTGAAAGAGTAGCTTTGGAATTGCACCTGACCATACCTTATGCTGCTTATGTACTTCTTGATATCTTCTGTAccataaatgtttatttttaatttaaaagtatgttgTCCAT

Function

GO: NA

KEGG:

id description
K08060 CIITA; MHC class II transactivator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144448 lncRNA downstream 82095 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 374691 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 374792 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 374792 5750285 ~ 5753921 (-) False G115279
TU144386 lncRNA downstream 378670 5749783 ~ 5750043 (-) True G115278
TU144532 lncRNA upstream 61737 6217528 ~ 6219216 (-) True G115395
TU144711 lncRNA upstream 846011 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1578306 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1586183 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1586750 7742541 ~ 7742747 (-) True G115580
AMCG00018274 mRNA downstream 3881 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018263 mRNA downstream 242713 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018265 mRNA downstream 319870 5794517 ~ 5808843 (-) True AMCG00018265
AMCG00018264 mRNA downstream 343813 5783076 ~ 5784900 (-) True AMCG00018264
AMCG00018262 mRNA downstream 383009 5741029 ~ 5745704 (-) True AMCG00018262
AMCG00018292 mRNA upstream 2489 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018286 mRNA upstream 64182 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018293 mRNA upstream 153578 6309369 ~ 6464857 (-) True AMCG00018293
AMCG00018283 mRNA upstream 429185 6584976 ~ 6593102 (-) True AMCG00018283
AMCG00018291 mRNA upstream 454842 6610633 ~ 6652773 (-) True AMCG00018291
TU144435 other downstream 177658 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 761959 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 824284 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 824325 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 840840 5286386 ~ 5287873 (-) True G115174
TU144568 other upstream 462684 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 482551 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1587427 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 3084021 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3763255 9919046 ~ 9924582 (-) True G116165

Expression Profile