RNA id: AMCG00018291


Basic Information

Item Value
RNA id AMCG00018291
length 3237
RNA type mRNA
GC content 0.50
exon number 24
gene id AMCG00018291
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6610633 ~ 6652773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTCATGCACTGGCCTGCTTTATCAGCACTGGTGCCCGTGGACAGCACTGCAGGTGTGTCTATCCCGAGCAGCCAGGTGCATCGCCATGAGGTTTAAACTGTGTCTGCTTGCCCTGCTTTGCGCATCGGCCTCCTACACCACAGCCGAGGAGAACGGAGAAGACGCTCCAGGAGAGGTAGAGGAGGAAACGGTGGAGAAGTCAGAGGAGATCACAGAAGAAAAGGGCGTCTTGGTCCTTCATGAGAAAAACTTTGCGAGGGCGCTCAGCGAGAACAAGTTCCTTCTTGTTGAATTTTATGCACCGTGGTGTGGGCACTGCCGTGCACTGGAGCCTGAGTACACCGCAGCGGCAGGGATCCTGAAGAACACAACCTCCGACATCAGGCTCGCTAAAGTGGACGCCACCGAGGAGAAAGGCCTGGCAGACGAATTCGGAATCAGCAGCTTTCCCATCCTGAAATTCTTTCAAGACGGCGACAGGAAGAACGCCATTGAATTCACAGGAAAGAGGAAAGCGCAGGGGATCGTTCAGTGGCTGAAGCGACGGACTGAACCCAGTGCTTCTGTCCTAGAGAGCGACCTCGACAGTGAGGATGTGAAGACCTTTTATGAAGTGGCCACCGACATAGTAGATATTACCTTTGGCATCACCAGTGATCCTGCTGTTTTCCAGAATTATGATGTTTCCAAGAACAAAgtcatattatttaaaaagTTTGATGAAAAACGTGCCGATCTGGAAATTACAGAGGAGCAGGAACTGGATAAGGAAGAGCTGACGAAGTTCATTCAAACCAACGCCCTTGAACTCGTCATTGAGTTTAATGAGCAGAATGCAGACAAGATTTTTGGTGCGAAAATAAACCATCACATCCTGCTTTTCATCAACAAGACTTTGGAGAAACACCAGCCGGCTCTGGAGTCATTCAGAGAAGCTGCCTCTGGGCTCAAAGGCCagGTGCTTTTCATTCTGATTGATGTCAACGCCAGCAACGATCACGTCCTGAACTACTTTGGCTTGAAAAGCGAAGATGCTCCCACCATCCGCCTCGTCAACATCGAAACAACCAAGAAGTACACCCTGGAGCAAGCAGATATCACAGCTGAAAACCTGCAAAACCTCTGCCAGGGAGTGCTGGAGGGCACAGTCAAGCCTAACCTCATGAGCCAAGAAATCCCAGAGGATTGGGATAAGAAGCCCGTGAAGGTGCTGGTAGGCAAAAACTTTGAGCAAGTGGCCTTTGACGAAACCAAGAACGTCTTTGTGGAGTTCTATGCCCCCTGGTGTGGACACTGTAAGGAGCTAGCACCAATCTGGGATGAGCTggcagaaaaatacaaagaccACGAGGACATTGTCATCGCCAATATGGATTCCACGGCTAACGAAGTAGAAGGGGTCACCATTTCTGGGTTTCCCACTCTGAAGTACTTCCCTGCCGGTCCAGAAAAAAAGATTGTAGACTATAATGGTCAGAGGGATCTGGAGACATTTTCCAAGTTCCTGGATAATGGAGGTGAACTGCCTGAGGAAAAAGAAGAGATGCTGCTCATTACGGACAAGTGCAGACTCAGCCCCAGCCACAGCAACAGCCACGGACAGCTTCTGTACATCCTCATTGACACGGACGAAAGCAGGAACGGGCGGATCTTTGAGTATTTCCAGGTGCGCGACGTGGACACACCTGCGGTCAGACTGCTGAACCTGACGGACAACATGCAGTACCAGATGCCAGCAGACGAGGTCACTGTGCGCAATCCGAAGCTGGATAGTCAACCCATTCCTGAGAACTGGGACAAGCAACCAGTGAAGGAACTTGTGGGCCTGAATTTTGAAAGAGTTGCTTTCAATGATGAGAGGAAcgtttttgtcatgttttATAAGCCATGGTCTCAGGAATGCAAGGATCTGTTTCCTGTGTGGGAGAAAGTGGGGAAGGTGTACGAAAACCACGAGTCTGTGGTGATCGCTAGGATAGACAGCACAGCCAACGACGTTCACACTCTGCTGCATGAGCGCAACCCCATGTTCAAGTTCTTCCCAGCGGTATACGGTGAAAAGGTGGTTCCCTATTCTGGAAAAAGAACGTTAGAAGACTTTGTTCAGTTTGTTGAAAGTGAAGTGGAATTAGCCAAGGAAGAAAAGGCAAAGgaggaggtggagagaaacaaaatagcCGAGGCAGAGAAAGcaaaagagaaggagaagaaggaggagtTATTCTTAAAAAGAGCgagaaagagaaataattacccccctcccctcccctccgcAGAGCACCGTGAGGAGGCGAGGATGAGCTCCACGACCAAAGCAGGGGACACGCTGCCCGCCCCACCGCCCTATGGGGGACCGGGTGGTACAATCAAAACTGGTGCCTCTGGTGTGACGGTCTACCATTTACACTCCCCAGTTAGCCCACCCCCACCGAGAGATGGGGAGTACGAGAACAAAATCGCAGactaCAACCAGTCTTCAGAAAGCCCAAACAAGTTTGTCAGTTATGATGACACACAACTGGGACGTAATCCGGGAATGACAACGTGCATATACTGCCGTCAGCAGGTCCTGACCAACGTCCAGTACAAAGTGGGAACGTATGCTTGGCTCATGTGCCTGCTTTTTATACTATGTGGGCTCATCGTTGGCTGCTGCCTGATCCCGTTTTTTGTTAAATTCTTCAAGGATGCTTATCACACCTGCCCCAAATGCCAGCGCATGCTTCACATTCACAAGAGGAGCTGCTTTACGTCGAAGATGTCAGTTGTGGATCTTGATTGCTTTTTCCAGAAATATTGTCCACGGGTTTTCATTGTCACTCAAGTCAATCATCTATTTGGAAAGCAACACGATATAATGCATGTAGACAACGAGCTCATGCCGATCAGATGGCAGACAGCTTCGCAGACCGCTTCACATCAAATCAAAGAACACACTGGCAAGCGCGTCAGACTTCAGACTCGGGGAGGACAAAACCTCCTCCTTGGCAGCAGCATGAGGTTCGAGTTTTTCTTGCAAGCCACGTTACTAATGAGTGTGAGCTTCCTGtctctccttcctcttttgAGCCTCCACTCGCTTCTCCTCTTGAAGTCGCTCGACAAGCTGCTGTGGGATGTCAAGGTCTGTGACTGGCTGCAAAACCTCACCTTCAAggaggggagaagaaaaaacaaaccacttaTCCTCCAGGAAGAAATCTGTTCTGACACATGGACATCAATACTAGACTAG

Function

GO: NA

KEGG:

id description
K09581 PDIA2; protein disulfide-isomerase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144532 lncRNA downstream 391417 6217528 ~ 6219216 (-) True G115395
TU144448 lncRNA downstream 564015 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 856611 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 856712 5750092 ~ 5753921 (-) True G115279
TU144711 lncRNA upstream 349029 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1081324 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1089201 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1089768 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 1189564 7842337 ~ 7842708 (-) True G115596
AMCG00018283 mRNA downstream 17531 6584976 ~ 6593102 (-) True AMCG00018283
AMCG00018293 mRNA downstream 145776 6309369 ~ 6464857 (-) True AMCG00018293
AMCG00018286 mRNA downstream 379626 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018292 mRNA downstream 427821 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018289 mRNA downstream 454842 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018284 mRNA upstream 1116 6653889 ~ 6675207 (-) True AMCG00018284
AMCG00018287 mRNA upstream 64111 6716884 ~ 6729381 (-) True AMCG00018287
AMCG00018288 mRNA upstream 84812 6737585 ~ 6754642 (-) True AMCG00018288
AMCG00018285 mRNA upstream 107211 6759984 ~ 6764079 (-) True AMCG00018285
AMCG00018290 mRNA upstream 123564 6776337 ~ 6777438 (-) True AMCG00018290
TU144435 other downstream 659578 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 1243879 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 1306204 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 1306245 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 1322760 5286386 ~ 5287873 (-) True G115174
TU144767 other upstream 1090445 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 2587039 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3266273 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 3476787 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 3654817 10307590 ~ 10309195 (-) False AMCG00018424

Expression Profile