RNA id: TU144568


Basic Information

Item Value
RNA id TU144568
length 1240
RNA type TUCP
GC content 0.43
exon number 5
gene id AMCG00018291
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6610633 ~ 6652773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATTCCTATTAACATATACGCATGATCCCACCCATTGATATTTAATGAAGATGAAATACTATGCAAATTTCAAGAAAGGAGTGGCAGTAGAAACTGGTGGAAACACCTGCATTTTTCTCAGTGTTACTTTGGGCTGCGTTGGATTTGGATCACCTGACTATTCACTGAGCACCGTGAGGAGGCGAGGATGAGCTCCACGACCAAAGCAGGGGACACGCTGCCCGCCCCACCGCCCTATGGGGGACCGGGTGGTACAATCAAAACTGGTGCCTCTGGTGTGACGGTCTACCATTTACACTCCCCAGTTAGCCCACCCCCACCGAGAGATGGGGAGTACGAGAACAAAATCGCAGactaCAACCAGTCTTCAGAAAGCCCAAACAAGTTTGTCAGTTATGATGACACACAACTGGGACGTAATCCGGGAATGACAACGTGCATATACTGCCGTCAGCAGGTCCTGACCAACGTCCAGTACAAAGTGGGAACGTATGCTTGGCTCATGTGCCTGCTTTTTATACTATGTGGGCTCATCGTTGGCTGCTGCCTGATCCCGTTTTTTGTTAAATTCTTCAAGGATGCTTATCACACCTGCCCCAAATGCCAGCGCATGCTTCACATTCACAAGAGGAGCTGCTGTGATTAACTGCCTTAACGCCTTTCAATGCCCACACCTCTTCCTTACAAAATCAGTAATAAGATTAAAGGGGATGTACAAGTGTCACATTGGTGATTCAGTAatttgtgtacatgtatatttttgttgcatgaattaaaatgtcaccCTGTGGAAGACCAAGCAGGTGGCATGTATGTGGAAAAGCCTTAATCCCAGAGTCCTGTTGTTCAAGGGTTTCGGGGGTTCTGTGAGGAACATTTTAACTGTTGATTAAATGTGCTATGGAAACTCTTATGACCATCCATTTGACTTAATAAAATTGTACCTGTTATATGaagtataaaaatgtaaataaccaCTTATTCATTGACTACCCTTGTTGTATCTAGGTGTATGGTGACTGGAGTACTTGTGATTTAACTAACCTAATACTATgcacatgttaaataaataaaaatcccaaaCTCCTTATGTAAGGAATAGCAAGCAATTTATTGCTAAACTCTTAATACTTGAAGACTTCTAACAATTGACTAATAGTCCTTGCAGTGATTGAGAGCCTTTTACACCTGTGATGGGTAGCTGTACATTGGAGTAGTTTACAAGTTTGAAGtgcaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144532 lncRNA downstream 399259 6217528 ~ 6219216 (-) True G115395
TU144448 lncRNA downstream 571857 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 864453 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 864554 5750092 ~ 5753921 (-) True G115279
TU144387 lncRNA downstream 864554 5750285 ~ 5753921 (-) False G115279
TU144711 lncRNA upstream 378189 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1110484 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1118361 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1118928 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 1218724 7842337 ~ 7842708 (-) True G115596
AMCG00018283 mRNA downstream 25373 6584976 ~ 6593102 (-) True AMCG00018283
AMCG00018293 mRNA downstream 153618 6309369 ~ 6464857 (-) True AMCG00018293
AMCG00018286 mRNA downstream 387468 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018292 mRNA downstream 435663 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018289 mRNA downstream 462684 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018284 mRNA upstream 30276 6653889 ~ 6675207 (-) True AMCG00018284
AMCG00018287 mRNA upstream 93271 6716884 ~ 6729381 (-) True AMCG00018287
AMCG00018288 mRNA upstream 113972 6737585 ~ 6754642 (-) True AMCG00018288
AMCG00018285 mRNA upstream 136371 6759984 ~ 6764079 (-) True AMCG00018285
AMCG00018290 mRNA upstream 152724 6776337 ~ 6777438 (-) True AMCG00018290
TU144435 other downstream 667420 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 1251721 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 1314046 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 1314087 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 1330602 5286386 ~ 5287873 (-) True G115174
TU144582 other upstream 14729 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1119605 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 2616199 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3295433 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 3505947 10129560 ~ 10136769 (-) False AMCG00018416

Expression Profile