RNA id: TU144582


Basic Information

Item Value
RNA id TU144582
length 1742
RNA type TUCP
GC content 0.39
exon number 5
gene id AMCG00018291
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6610633 ~ 6652773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaagtattaacaGCATGTGATCTTATTTTGCACAGGTCCTTGGGTAAGATTTCTAGACCACAAAAAAGCAGGTCAAGACCTTCAGGAATACATCTTTACAGTTAACAGCATTCAGAAATTGTACTGACCACACAGTACATGTCCTTCGGTTTCCCACACATTAACTCTTATTCCATTCATCCATAAGTTTATCTTTTGAAGCTGTGCAGAGATTTACACTAGAACGGCCATTTATGACTCGTATCTCTCTCTACCAGTATATCAGATGAAACAAAGGAATGCAGTTTTGAACAAAGCAAGAAACGACCAATGAACTTATCAAAAAGCATAAACTAGACTTGCTGGTTTTTCTGTGTGATGTATACCatggtgattgttttttttttttaatcaaaatgtgaGGGAGTAATAGAAACATAACTTACCAAGCACTTCCTATATGTGGTCCATTTGTGCTCGATCTCTGCAGATGCTGCTCATTACGGACAAGATAAACCTAAAACGATGGATCCAAACACTGCTGGTCCTGtcaacaaggaaaacaaaaacacaatttccatCAATATCAATTCCATGCCACCTACTCCTGCCCCCGTAGTGCAGACTCAGCCCCAGCCACAGCAACAGCCACGGACAGTTCATGTTGTGCAGGCGATTCCTGTGCAGGGTATATACCACAATCTTGCAGAGAACCCCTGCACCACAACATGCACTAACTGCCAACAGAGAATCACAACTAATGTGGTCTACAAAGCAGGGACCTTTTCCTGGGTgatgtgcattgtttttgttattttcggGTTGGTCTGTGGCTGCTGCATTCTCCCCTTCTTTGCGCAGATATTTTTGGATGCTCACCATAGTTGTCCCCTTTGCAACCAACACCTCGGTATTTATAAACGAATGTGACCTTTCACCACTGGGATGGTGCACTGCTGGTGTTGTTGATAGAAGACAGCATCTTCTGATGAAAGAACACCAACGATGGGGAAaggatgaaaatgtttcaaattcagATGCTTGGAATTATATCTGCTCTGGCGAAGACACAATCACTGAATGTACatgctatatatacatacacaatttttttctttttctgtcattttctttaaaactgcAAAGTACATACACTGATTTAGGGCTTTGAAAGAGGTTTCAtcaaatttgatttgattgggcagtatatatttttgtctccCTCTGCTGTTGGTAAAAGATATAGCTCTGTGTTGCAACTTGCTTTTATACTGTATTCTACACCCAACTACCTGCAGGTAATACagattgatgccattgactacTACAGCCAACATGTCAGAGATAGCAATGGCTATGCCCTGTTGGTgccaaaaatataaaacctaCATCCGAAAAACAAGACTCTATCGGTTACTCAAGGGCAGGAATAACCTTGCCTCAGAAAAGGTTTCAGTAGATTAAGCACTCCAATAAGACATGCAAATCCTGCCTGCAGGTTTTTATCTATACCTGCAAACATGTGAATTCTGAAATCTGTGCGAGTTTAAATGGTTTCCATTTGCTCAAAATTACCTACCAAGAACTATGGTAAAAATGCATAACTTAACAGAGTTCAACACATCACCTTTATTGTTTGCTACTCTCACTGTTctccttttatttatgtaattcatCCATAACTTTTTGGTTTAGACTGCTTTTATGCTTGATAGATCTAaaagtgacaaaataaaaaaacataacttgGACAAATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144532 lncRNA downstream 419126 6217528 ~ 6219216 (-) True G115395
TU144448 lncRNA downstream 591724 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 884320 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 884421 5750092 ~ 5753921 (-) True G115279
TU144711 lncRNA upstream 358530 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1090825 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1098702 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1099269 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 1199065 7842337 ~ 7842708 (-) True G115596
AMCG00018283 mRNA downstream 45240 6584976 ~ 6593102 (-) True AMCG00018283
AMCG00018293 mRNA downstream 173485 6309369 ~ 6464857 (-) True AMCG00018293
AMCG00018286 mRNA downstream 407335 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018292 mRNA downstream 455530 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018289 mRNA downstream 482551 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018284 mRNA upstream 10617 6653889 ~ 6675207 (-) True AMCG00018284
AMCG00018287 mRNA upstream 73612 6716884 ~ 6729381 (-) True AMCG00018287
AMCG00018288 mRNA upstream 94313 6737585 ~ 6754642 (-) True AMCG00018288
AMCG00018285 mRNA upstream 116712 6759984 ~ 6764079 (-) True AMCG00018285
AMCG00018290 mRNA upstream 133065 6776337 ~ 6777438 (-) True AMCG00018290
TU144568 other downstream 14729 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 687287 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 1271588 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 1333913 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 1333954 5300107 ~ 5304388 (-) False G115183
TU144767 other upstream 1099946 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 2596540 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3275774 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 3486288 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 3664318 10307590 ~ 10309195 (-) False AMCG00018424

Expression Profile