RNA id: AMCG00018293


Basic Information

Item Value
RNA id AMCG00018293
length 1392
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00018293
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6309369 ~ 6464857 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCTATGAAAAGGCAGCGCTGGTGGCCATAGCTGACGACTCCAATTTGTCATgTTACAGGTATCTGGAGATAAAGGAATCCAAACAAGAGCCGGGCCACCAAAGTCCTGAAATGAAGCCGAGTGCTCAGAGTGCAAGGCTAGGGAGCTCACTCAGAGTAAGACAACAATGGATCAACAAGAACATCCAATCAAATATTGTGAGACATGAAGAGGTGAAGAGACAGGTAGACCTCAACCTTCAAGTCTACCATCATGTGACAGGGGAGTCAGGCGTTCTCAAGGACAGAGGAATTCACAGAATGCTGGAGAATTTGGGCCTTTTCCCTCTGCAGGCTGACAGCGCCAGGGAAtttgtggCATCATTCTTTATCTTAAACTGCCTAGGCTTGGAGCCACCTTGCGTGGTGTCGGCGCTGACCGCCACCTCCACCGTGTTGGGGTTCGACTCGTTCAGGATACCAGTCAGCCACTGTGCTTCCAGTTCCTCCATCTCACCTGTGGGGGACAGCAAAAATTCAGCCCAGCTGAACAAGGAAGTGATTGTGAACACGAGGACACGATATTCCACGTTCCTGTTGAATCCCAGAGGACTGAGGTACTCAAATATAAAGACGGCCATCGCTGTGACAATGAGCAGCATCACAAACATCATCACCCACACGGAAGCACTGAAGGGCTCTGCAGAGGGAACGAGGACACAGAAGCGCGTCAAAAACTCTAATCCCAACACTCCAATGGGCCTGGACACAACCGCCTGTCCCGTATTCCCTGGAAACTTGCAATCAAGTCGAAGTCTGGGCACAGAGTTGCGCATGCAGGTGCCGGTCAGGCGCTCCACGTTCTCCACGATGACGAAGGGCGCCTCTTCCAGGGTGACGATGCTCAGGTGGTTGTCGTCGGACTCGGCGTCTCCGAAGGAATTGAATCGAGGCCAGACGGGGTACTTCAGGcCCAAAGGAAGGCTTAGgtgGATAACCATGGATACAGCTGGTCTTTGCCTCCGGTATGTCACCAAACTCTTCCAGCATGGAGACCGCCGCTGTGGTTATAATCCCAAGGCCGTCTCGCACCCGGGCCTCCAGAGGGACACCGAGATCATTCCAGACGGGAACTCGCCAGGGGTGATTTCGGTGTTCCCAGTGGTCAGGCTGGGAACGATCCAGTTGAAGCCATACCCTGTCAAACCCAAAGAGCGCGCCTCTTCCAGAATGTACGCGGCCTCGTCTTTGGAACAATACAGCAAGATCACAGAGGACTGGATCTTCTTCAGCTGGATCTGGGTCCTGGTGTCCCCAGCGACCGCATCCAGCGTGATCATGTTCTGTAAATCCCATCCCACGAAGCTGTTGTCCACCGTGCTCTTGAGGATGCTGATGAAATCCTGGTAG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144532 lncRNA downstream 90153 6217528 ~ 6219216 (-) True G115395
TU144448 lncRNA downstream 262751 6046030 ~ 6046618 (-) True G115332
TU144388 lncRNA downstream 555347 5750285 ~ 5754022 (-) False G115279
TU144390 lncRNA downstream 555448 5750092 ~ 5753921 (-) True G115279
TU144711 lncRNA upstream 536945 7001802 ~ 7002005 (-) True G115534
TU144760 lncRNA upstream 1269240 7734097 ~ 7734384 (-) True G115577
TU144762 lncRNA upstream 1277117 7741974 ~ 7742210 (-) True G115579
TU144763 lncRNA upstream 1277684 7742541 ~ 7742747 (-) True G115580
TU144788 lncRNA upstream 1377480 7842337 ~ 7842708 (-) True G115596
AMCG00018286 mRNA downstream 78362 6219973 ~ 6231007 (-) True AMCG00018286
AMCG00018292 mRNA downstream 126557 6158280 ~ 6182812 (-) True AMCG00018292
AMCG00018289 mRNA downstream 153578 6128713 ~ 6155791 (-) True AMCG00018289
AMCG00018274 mRNA downstream 184537 6068303 ~ 6124832 (-) True AMCG00018274
AMCG00018263 mRNA downstream 423369 5881546 ~ 5886000 (-) True AMCG00018263
AMCG00018283 mRNA upstream 120119 6584976 ~ 6593102 (-) True AMCG00018283
AMCG00018291 mRNA upstream 145776 6610633 ~ 6652773 (-) True AMCG00018291
AMCG00018284 mRNA upstream 189032 6653889 ~ 6675207 (-) True AMCG00018284
AMCG00018287 mRNA upstream 252027 6716884 ~ 6729381 (-) True AMCG00018287
AMCG00018288 mRNA upstream 272728 6737585 ~ 6754642 (-) True AMCG00018288
TU144435 other downstream 358314 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 942615 5356846 ~ 5366754 (-) True AMCG00018251
TU144251 other downstream 1004940 5300107 ~ 5304429 (-) True G115183
TU144253 other downstream 1004981 5300107 ~ 5304388 (-) False G115183
TU144242 other downstream 1021496 5286386 ~ 5287873 (-) True G115174
TU144568 other upstream 153618 6618475 ~ 6623613 (-) False AMCG00018291
TU144582 other upstream 173485 6638342 ~ 6643272 (-) False AMCG00018291
TU144767 other upstream 1278361 7743218 ~ 7773892 (-) True G115581
TU145207 other upstream 2774955 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 3454189 9919046 ~ 9924582 (-) True G116165

Expression Profile