RNA id: AMCG00018296


Basic Information

Item Value
RNA id AMCG00018296
length 462
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00018296
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 6815434 ~ 6818771 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTCCGAGCTACCGTCTCCACTGCAGGCTCCCACATCCCCACAGTCGCCGGTCTCCCCCAGCTCACTGCGCCTGCCCGACTGTGGGCGACCCCGCGAccgctccccctcccccatgaGGGGCTACCTGGTCCCCAGCCCCCTGCCCACACGGCGCACCCGCACCTGCTCTGCGACGGCCCGTGCTGCTGAGGGACCCGTGTTCAGTGGCGTGTGCAAGTGCTTCTCTCGCTCCAAAGGCCATGGCTTCATCACCCCAGCAGACGGCGGCAACGACATATTCGTCCACATCTCTGACATTGAAGGCGAGTATGTGCCCGTGGAAGGCGATGAGGTCACCTACAAGATCTGCTCCATCCCACCGAAGCTCGAGAAAGTCCAGGCGGTGGAGGTGACGATCACTCACCTCACTCCGGGGACCAAGCACGAGACGTGGTCAGGGACCGTGGTCAGCTACTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144620 lncRNA upstream 35388 6733707 ~ 6780046 (+) True G115467
TU144635 lncRNA upstream 42171 6772432 ~ 6773263 (+) True G115481
TU144612 lncRNA upstream 67996 6710482 ~ 6747438 (+) True AMCG00018280
TU144586 lncRNA upstream 137081 6654122 ~ 6678353 (+) True G115439
TU144589 lncRNA upstream 148211 6658533 ~ 6667223 (+) True G115441
TU144669 lncRNA downstream 10317 6829088 ~ 6833312 (+) True G115511
TU144677 lncRNA downstream 18935 6837706 ~ 6838861 (+) True G115514
TU144712 lncRNA downstream 266803 7085574 ~ 7086966 (+) True G115535
TU144737 lncRNA downstream 901836 7720607 ~ 7720964 (+) True G115560
TU144776 lncRNA downstream 1064434 7883205 ~ 7890901 (+) True G115585
AMCG00018297 mRNA upstream 17209 6792054 ~ 6798225 (+) True AMCG00018297
AMCG00018295 mRNA upstream 24971 6785250 ~ 6790463 (+) True AMCG00018295
AMCG00018281 mRNA upstream 82940 6731610 ~ 6732494 (+) True AMCG00018281
AMCG00018280 mRNA upstream 101977 6710543 ~ 6713457 (+) False AMCG00018280
AMCG00018282 mRNA upstream 111303 6688637 ~ 6704131 (+) True AMCG00018282
AMCG00018294 mRNA downstream 8920 6827691 ~ 6828740 (+) True AMCG00018294
AMCG00018300 mRNA downstream 65164 6883935 ~ 6899668 (+) True AMCG00018300
AMCG00018305 mRNA downstream 918855 7737626 ~ 7746484 (+) True AMCG00018305
AMCG00018308 mRNA downstream 985468 7804239 ~ 7814791 (+) True AMCG00018308
AMCG00018309 mRNA downstream 1026696 7845467 ~ 7878193 (+) True AMCG00018309
TU144414 other upstream 864417 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 2051529 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 2211445 4601490 ~ 4603989 (+) False AMCG00018216
TU143856 other upstream 2622320 4191717 ~ 4193114 (+) False AMCG00018196
TU143458 other upstream 4167660 2640846 ~ 2647774 (+) True G114551
TU144781 other downstream 1074856 7893627 ~ 7894449 (+) True G115590
TU144853 other downstream 1301007 8119778 ~ 8122171 (+) True G115648
TU145016 other downstream 1874593 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 2380886 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 2421040 9239811 ~ 9241815 (+) True AMCG00018360

Expression Profile