RNA id: AMCG00018321


Basic Information

Item Value
RNA id AMCG00018321
length 3937
RNA type mRNA
GC content 0.50
exon number 16
gene id AMCG00018321
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8140007 ~ 8150550 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCCCCCGGTTTCCCCCTGGCTTTCATTCCCACACATGAGGGCGTTCACCCGCCGTGGCTGCCCTGCTCCTCCGCCGGGGGCGCTGCACCGGCGCTGACACCGGGGTCGGATTACAGGAGGCAGGACGGGACAGCGCCTGGGACAGAAACCCGGGATCCGGCATTTGCCCCGCTCGCATCGGGACGGTTTTCAGGACAGCCTCACCCCGGCTCGGATGGAGACGGACTCGGTTTTCTACTCGGCTGCCACTGGGCTGGCCAGTAACCCGCTGCTGGACCAGCTGCCAAGCTACCAGTCCCTCCTGTACCGCAGGAAGCCGTCCGCAGTGGGCAGCGCTCGGAGACGGAGCCAGCGAAATGGATCGACTTCCAGTGGCAGGGGGACAGGGCACAGGGCAGAGGAGAGAGCGACAGCCCCTGACACCCAGCGTCCGGTCTACGAGCTGCCCATCAACATGGCGGAGAAGAGGAGAGCCAGGGAGCAGCGCATCGAGCAATGCAAGGACCTCAAAAGCTGGGAGCAGTGGCGTCTTAGTGTGAGACGCTCCTGGAAGAGGTTCAGGGAGGAGACGTCGGAGGTCCTGTCTACATTGGAGCTGTGGAGGGGAGACATCCATGTCATAGAGGGGAAATTTGGCACCGGTATCCTCTCATATTTCTCCTTCCTGCGCTTCCTGGTTCTGCTCAACTTCATCATCTTCCTGCTCATGTTCAGCTTCGTCACCCTGCCCATCATCATCGCGTCTCACGGACTGGCCAACATCACCTTCCCCAGCCAAGGAGgCAATTGCAGTGACTACCCGAGCAGCATGCGTCAAGGCCTGGTCCTCTTCCATCAGTACATCATTGACCTGCTCTCTGGGACGGGTTTCCTGGAGCAGACCTACCTCTTCTATGGCTATTACAAAGTGGACACTGTGCAGTTCCTTAACATAACCTATAAAGTCCCTCTGGCCTACCTGCTGGTGACCTTCGCCTATCTCTTCCTCAGTCTCATCTGGATTGTGAAAAGGTCTGTGGCGGGTTTCAAACAAAACCTGGTGCAGGATGAGGACCGTTTCCAGAGTTTCTGCAACAAGATCTTTGCTGGCTGGGACTTCTGCATCACGGATGAGAACGCGGCCAAACTGAAGCGCAGCAGCCTGCTCTATGAGTTGAAGACagacctggaggaggagagaatCAAGCAGAAGATCGCCGACCGCACGCGCAGGGACAAGTGCCGCATCTACCTGCTTAGGTTGGTCCTCAACCTGTTTGTGGTGGCAGTGCTGGCGGTCTGCTTTTACTGCATCTACAGGGCCACCATCTTCTCACAGGAGGGCCAGATCAGTCAGTCGAAGAACTTCATCCTGGACCTGATCATAGAGTACCTGCCCTCCATCGTCATCACTCTGGCCAACTTCATCACACCGCTGATGTTCGACAGCATCATCCAGTTCGAGGACTACCCCCCCGCCTTCGAGATCAGATTCACACTGATAAGGTGTGTCTTCATGCGGTTGGCCAGTATTGGGGTGCTGCTCTTCTCTCTGTGGTCTAAGATCACCAGCTGTCAACCAGATGAATGTCTCTGTGGATACAACCATCAGCTCTACTCGTGCTGGGAATCACGTGTTGGCCAGGAGATGTACAAACTCATGATCTTTgacttcatcatcatcagcgCGGCCACTGTGTTTGTGGAGTTTCCTAGGAAGCTGATTGTGACTCACTGCAACTCTGGGCTGGCGAAGTGGTGGGGCCAGCAAGAATTTGCCATCCCCCAGAACGTGCTGGAGATTGTGTATGGACAGACCATCTGCTGGATCGGCACCTACTTCTGTCCCCTTCTGCCCGCGATCAGTACTCTCAAATACTTCATCATCTTCTACGTCAAGAAGATGAGCCTGATGAAGAATTGCCGGCCAGCCACCCGCCCGTTTCGTGCCTCCAGCTCCAACTTCTTCTTCCTGGCTGTGTTACTGATCGGCCTGGCCATGGCCTGGGTGCCCGTGGGTGTCAGCATTGCGCAgaTCAGAAGTTCCCAGGCCTGTGGTCCCTTCGCCAATTATGCCTGGTCATGGTGGGTGCTGCCCGAGATGGTGGAAATGCTGCCGCTTGGCCCCCGCAAATTTTTCTACACCATCTCCTCTGAGGCCTTCGCCGTGTCCTTCTTTGTGGTGACGTGTCTGGCCATGTTCTACTTCATCGCCCTGGCAGGAGCTCACAAGCGTGTGGTCAAGCAGCTGAGAGAGCAGCTGGAAATGGAGGGGCGTGACAAACGGTTCCTGATCCAGAAGCTCAGCCAGGCACAGGTAAAGCTGTCGCTGCCTCAGAGCCGCCAGCCGAGGGACCCCTTTTTGAGCTCAGGCTCTGTCTACAGTGAGGCCCAGCGAGACCATGGTGGCCATAATAGAAGTAACTCTGTGTTACTGGAACAGCCGCCGCCCACCTCCGTCACACATGCCTGACACTgggactaacacacacacacacacacacacacacacacacacacacacacacacagactggtaCTGGACTGAGGCCAGAGCTGTGACCAACTGCCTACACTGACAAAAAACAAGTACTGAGCTCCTATAGGAACAGGATTCCTTTTTCCCTTCAGCCAGATGATACCAATTGGACCAAAAAAACACTACTTTTCAGTCAACCTTGTGTTCGTATGTTTGTTTCACCTTCTGTGGGCCTTACCAAAATGCATTAATTGGTACTTATGACTGGAATACATGTATTGCAAGTGCTAGTGACTGTAACAAATCACAGCCCAGTCCTGCTCTTGCTTCTTTCGCTCTGTCGTTTTCTGTGAAGGCTTTCTCAGCAGGTAAGGGCTCTGTCTGAACAGGAACAGACATCTGTACACTGTAACACCCATACCACTGCTGTACTCCCATTACAACCAGCCCGGATTGATGACAGGAGAGTTGTTTGTCTCCGGCTATATTAACATTgggttctttaaaaaaacacaagactgCCTGTTTAGATTTTAAAACCTTATTCATCTGTATTAAAGCATTCCTGTTACTCGCATGTTTCGGTTATTCCACTGTTGACATTGACAGTTGTTTATCTGTTCTTATCTTGCCTTCCAAGAAGGATTTCGCCTTAAATTCCATTAATTGATTTGTAAAGAACTATGCTGTGTGggacaaatacaaatgtaggtCTCTAAGCCTGCTGTTTATAGTGTTGTCCCATGTGACGGAGATTAATTACTAATAAGAAGCAGGTGCAGTAGAAGTTTGTCTTTATAAAGCATATTAGTCATAATTCTACTTTTAAACATTGtgcaatgttgtatttatagCATTTCTGGTACCTTTTAAATCATTTGGGCACTAATGCACAACAGTGACGGTCCGATGGCAGCTACATTAGCCTTGATTACCAAAACAGCTCCTcctttttctaaataaaaccacagaaagCTGTTGTCTAGGATCCCACAAGGAGAATACTGAATCAGTTAGCAACAACAAACAGTACATACATTTGCTTCCTGAAAGTCATAACACACCTTTATTATGTTGTTCAGCTGTGGTTGAATTTTGGAGGGTGAGCACGTCTAGCTCTAGTGATACTTGTTttatatgtgcattttatttttttaaacctgtggGCTGTAACTGCTACCTCCTTCTCATTCCTTCACATCGAGGAGCACATTCTTCATGAGcctcacagaaaacaaaatgtgagagGGTGAGCAGGAGTGGGGTGGCAATATTCATTTGAGTGTGTATATTTTCCTGCACTgttctatttattcatttctaaaAGCGTGTATGTTCGTGACCACTAAAACTTGCATGTGTAAAACTGTGTAAAACCGCTGTATATATAGGAATAAAAATGGTGTTTGGGGTTATTGTCAACCACTATAGAGTTTACAAGTAGTATgttcaattcaaataaaaactttttaaaata

Function

GO: NA

KEGG:

id description
K21988 TMC; transmembrane channel-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144843 lncRNA upstream 45558 8094200 ~ 8094449 (+) True G115640
TU144782 lncRNA upstream 241827 7897940 ~ 7898180 (+) True G115591
TU144776 lncRNA upstream 249106 7883205 ~ 7890901 (+) True G115585
TU144737 lncRNA upstream 419043 7720607 ~ 7720964 (+) True G115560
TU144712 lncRNA upstream 1053041 7085574 ~ 7086966 (+) True G115535
TU144888 lncRNA downstream 143866 8294416 ~ 8347836 (+) False G115679
TU144889 lncRNA downstream 143866 8294416 ~ 8347836 (+) False G115679
TU144892 lncRNA downstream 192580 8343130 ~ 8347836 (+) True G115679
TU144883 lncRNA downstream 201527 8352077 ~ 8372827 (+) True G115678
TU145024 lncRNA downstream 552607 8703157 ~ 8704903 (+) True G115796
AMCG00018318 mRNA upstream 21575 8116069 ~ 8118432 (+) True AMCG00018318
AMCG00018317 mRNA upstream 25817 8097388 ~ 8114190 (+) True AMCG00018317
AMCG00018319 mRNA upstream 50033 8082972 ~ 8089974 (+) True AMCG00018319
AMCG00018313 mRNA upstream 61233 8074678 ~ 8078774 (+) True AMCG00018313
AMCG00018312 mRNA upstream 65846 8050410 ~ 8074161 (+) True AMCG00018312
AMCG00018320 mRNA downstream 4260 8154810 ~ 8167750 (+) True AMCG00018320
AMCG00018325 mRNA downstream 139451 8290001 ~ 8315541 (+) True AMCG00018325
AMCG00018324 mRNA downstream 199561 8350111 ~ 8351371 (+) True AMCG00018324
AMCG00018327 mRNA downstream 249283 8399833 ~ 8404453 (+) True AMCG00018327
AMCG00018332 mRNA downstream 336016 8486566 ~ 8514892 (+) True AMCG00018332
TU144853 other upstream 17836 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 245558 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2188990 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 3376102 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 3536018 4601490 ~ 4603989 (+) False AMCG00018216
TU145016 other downstream 542814 8693364 ~ 8694719 (+) True G115789
TU145182 other downstream 1049107 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 1089261 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 1411611 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 1458527 9609077 ~ 9612918 (+) False AMCG00018380

Expression Profile