RNA id: AMCG00018339


Basic Information

Item Value
RNA id AMCG00018339
length 4262
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00018339
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8666737 ~ 8676808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGTCGTAAAGCGTGTAGCAGAGAGGACGTTGTGATTGAATTACTTgcatctttcatttaaaaaaaaatgcctctTCTAATTAACAGCTGTAAAATTGAACGTCCTCACACGACCGCTGAATTCTTCAAAAAGTACCCACATCTACAGGACAGCGCCAGGGCCTTTCGGGTGAAGACGGCGGGCAGTGTGGACCCCGCGGGGCTGCTGTACGTGCAGCAGAGAGAGTTCGCTGCGACCACCCCAGCAGACCaGTCCGTCACTGTACTTGCATCTGATGACGCCACCACCTGCCACCTGGTGGTATTGCGACACACGGGAAGTGGTGCTTCTTGCCTGGCGCACTGTGATGACTCCAGCACCTGGAGTGAGGTCCCACTGTTCGTTGAGGCAGTGACATCACTCAGCAGCCACACTCAGGAAGGAAGGCAAGATGAAATGGGAGTTTTGTTGGAGCTGCATCTCGTTGGTGGTTTCGATGATGACATGAAAACATCCCAGAAACTCAGCCTCAGCCTTCTAGCCACCTTCCACAGTCAGAAAGAGGATATTCACCTGGTGACGTGCTGCATCACAGagctgaatGATGTCGTGTCTGAAGGGATCCACAGACCTGCGGTGTATGGAATAGGAATCAACGTAAAAAGTGGGGAGGTGTTCCCAGGGTCCTTCCCCAGCAGAGGCCCGGCCGAGGAGCTGCGATCAGCGCGGACCTTCACTGGAGGACAGATGGCCAACATCTACGATTCCAGTAAAGAGCTGGTGAAGGTCGGGCCCTGCAAATGGTCGCCCAACATGGACATCGGCTTCTGGTTGATGCAGGACGATGACACTATATTAAAGTACCTGTCCACATCGCCTCAGGTGGAACCTCCACACTTCATACAGCACATCAAGAGCACCATCCAGTTCCTGCTGGACCATCCCAGCCCTGACAGCCTGTTTCCAGGGGGACAGGCCCAGCTCTTCCACAGGACGGAGCAGGGAAGCTGGGAGAGGGTGACTCCAAGCGAGCAGCAGTAATGATCTCATGTCCTCTTCCCACTGTACGTACTGAGAACGGAGGTATCCTCCTCCCCAGCGTCAAGAGCCATGCCACGCCTTACCCCAAGCTTTCCGGTTCCTCTGCCGTGTCCCATTTAGCCTCCTCATTTGATAATGTACTGATTTTACCTGACTGAAGTGACCGAGCCCTTTGTCGATGTCTTTTGAGATCTCTGATCTCTGATCTCTGAGTGTTTGAGGTGATTGAGGTGTCCAGCTCATCTCTGTCAAGACTCCCATTGATGAAGACTGGGGTTGGCATGACTTCACACTGTACAATCCTGTTGAGTCTGTTGAGACTACTCTCGGCAGGCTCTCACTGTACTTACACTGTAAGCCTGGGAACAATATGTTATGCAGCACAACAGGAGAGTGAATTACAGTCCCATAACGCTGCAGAGCTGCCCTTCATTCCCCTCGAATCCCCTTGTTTATTCCCCCAAGTGGGTGTGTTGTCGTGCCAGGAATCGCAGCCTCTAAGGGGACGTGGATTACCTCAGGGCTCTCGCAGGCCGCCCTCTGGTTTAGCATAAGAACATTTTAGAGCAAAGGAAAGACTTTCAAAGGAAGAAGCAAGATCCACGGCAGATGattgtgagaaaaaaaatattcatttaaagTAACGTATGTAAATGTGCATTGGTCTCTGCAGTAACAGTCAGAGGGATGACTTTCCTACAATGTGTTGGGGAAATCAGAACTGGAGGCCCAGGGGTAAaagtaagaaaaagaaaaagacatagTGGAAACAATATGAATCAAGTTTAATAAAGTAGTCAGGATTCAAACagggctttttttctttcaaaaggaaATCTGCCTCACAGcttggagatttattttttaaacaaaaaaaaaaaaaaaaagaggaaacaaTCACCTAGACAAGACTATATCAACAACAATCTGAATGtcttcttttgcttttaaagtttttttttaatacaatattgtcTTCAAACCACAAAATTTATGTAAATGGCaaaaagaaatttaaaaaaataataaaataaagccccTCCCATCcccttaatatatatatatatatatatatatatatatagatagatattaaaATTAGACACCAGATTACCCCCCCTCCGTCTCTATAAATCAATATTCTTCATTGCaccaaaaattacaaaaagaacCATGTTATAATAAAGGAGGAAGACAAATAGATCTGAGCACTTAAAACACAGCGAACAAAAATTGCACTTTCTAGAAGGTAAAAATGTCACCCCCTTCAACACCACCCTTGCAGAAATCTCCACTCTCTGGGTTTGGCATTGTGTAGCCTGAGAGCACAGTGCTGTCAGTATGACCGCAGTGAATGTGGGCAAGACTAACCCTGAAACATGAGTGGCCTCTCTGTATTGTTTCTTCAAGCCTTTTGTATGGTTTCAAAGCTTATCTGAAACGAGCATGGTTTTGATTTCAAGGCTGTATTACATGTTGCTCTATACTAAACTCTGCATGAGCTGGTGTTGTAGAGGGGGGAGGGgaatcatacaaaaataaaaattacctAAAAAGTAAATTCACGTGTTGGATGTGcacttaaaaaaatcatattgcACTGATATACTGTATGCATGTGTGCACTATATGTCATGTGTGAATTGCAATGGAAAATCTATCCCACATCAAAGTGTCCAACTGCTAGGGGACACTAACAGTGCTACACATTGTGCTGGAGCTCGTGAGTAATTGGAGGGGTTAAGTGTTACATCCTTTCAGTAGCACCTGGACGGTTTGGATTTTTGTGCATCAGGGAAAAAAGTTACCTATATCTGGTAcggacattatatatatatatatatatatatatatatatatacatatataggttttgatgtaaaataatttaatctgttatattaaaaaaaaaaaaaatgtagatcaCACAAAAATCTAACTAGGGTGTTGCGAGACACATGCTTCATACAAACACTAAGGAAACCTGAACATACTAGCCAGCGATGGATGTTTTCATATTGAAGATTAATTCTAATTAGAGATTTCtaaaaacagatttcaatttttttttttttttttttggtatggtTCTACTCATTCCCAGCACCTATTAAACTGGATTACCATTTTTACcttcttttcagtttcaacGAGTTGCTTTATCAATAACACCCTGCTACATCTACAGTGCatcccttcatttttttttttttaaacaaagcttAATAATAGTTGCACTTTGGTGATAAGATGTTTGCAAATTGGCCCCATTGTCTCTCGATAAGCATTCAGTGTTAGTGGTGCTCTGGTCCCTGGGTTACTGGGAGGATTGACCTCATCACGCTGGGGGCGGTGCGATCAGTCATTGCAAACCCTACAGCTCAGCAGCCCAGTAACTGGAGCTTCATTGCAAAACCCGCCTTTGctgtaaacacacaaagcagTATTCCTACGTAACTTGACCTTCATGACACATCAGCTTTCATGGAGAACCTGCCTTTACACTCCCGATGTTAAATCCTCCGATTGAGCCTGAGTCACAGTTTGCAGCCTATCTTGCGAAAGGAATTACAATGCAATTAGTGTTATCTATCTATTAGGATCTTTACGTTAATGTTAGctagcctttttttttaaattatattattttttacatcaaCTAACCAAGGCTCTTGTgagttagttttctttttttcctttggaaaaaaataaaataaataaaacaagatctAAAGGAAACAACAGTTCAAACAGCCTGTGAACCAGGCGTTGAGATACAGAGAAACGTTCCTTGCTCTTCAGGGGAAAGGGTGTGTAGACTACTGATCAATTATATACGAGGGTGACGTCACAAAGGAGCAGCAGTAGTATGGTGTTACAGAGGTTCTACAAGTTTAAAGTGTTCTGTAATAACATTTTCCAGTTCTCCCATATGAATCTGTAAGCACTTCTAGGTTCCTTGATTCACATTAACCCAGTTCTATGCCAGCACATTCCCTCCCCATCACTCTGGCCTGTAGCTGTACTGTCCTGCTTTGGGGGATACTGCCAGCTGAGAGATGGTCCTGGGTAGCCTATCAACTCTTAATACAGGATCCTCTCCTGGGTTTCTGTGTACTGTCCCCTGAACAACCAAATACTTAGTGTACAGCTTCTAGCACAGTGGCCCGATGGTCTCTGAGCTTGTAGACTACTGGTGTGTGTACTACATTTCacgcattatatatatatatatattt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008418 protein-N-terminal asparagine amidohydrolase activity molecular_function

KEGG:

id description
K14662 NTAN1; protein N-terminal asparagine amidohydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145083 lncRNA downstream 18361 8642346 ~ 8648687 (-) True AMCG00018344
TU145037 lncRNA downstream 147845 8517334 ~ 8519203 (-) True G115807
TU144949 lncRNA downstream 233478 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 798422 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 824340 7842337 ~ 7842708 (-) True G115596
TU145110 lncRNA upstream 185065 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 523992 9200800 ~ 9215817 (-) True G115949
TU145342 lncRNA upstream 804102 9480910 ~ 9482152 (-) True G116058
TU145352 lncRNA upstream 850684 9527492 ~ 9527736 (-) True G116065
TU145440 lncRNA upstream 1097498 9774306 ~ 9777349 (-) True AMCG00018390
AMCG00018344 mRNA downstream 18241 8641896 ~ 8648807 (-) False AMCG00018344
AMCG00018341 mRNA downstream 35460 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018343 mRNA downstream 64314 8597093 ~ 8602734 (-) True AMCG00018343
AMCG00018334 mRNA downstream 126009 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018329 mRNA downstream 197419 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018342 mRNA upstream 1056 8677864 ~ 8684648 (-) True AMCG00018342
AMCG00018340 mRNA upstream 10901 8687709 ~ 8688230 (-) True AMCG00018340
AMCG00018347 mRNA upstream 16551 8693359 ~ 8698933 (-) True AMCG00018347
AMCG00018346 mRNA upstream 23603 8700411 ~ 8717402 (-) True AMCG00018346
AMCG00018353 mRNA upstream 147834 8824642 ~ 8905411 (-) True AMCG00018353
TU144767 other downstream 893156 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2023776 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2043435 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2715993 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3300294 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 563004 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1242238 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1452752 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1630782 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1658393 10335201 ~ 10342089 (-) True G116306

Expression Profile