RNA id: TU145067


Basic Information

Item Value
RNA id TU145067
length 1707
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00018339
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8666737 ~ 8676808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatatatatatatatatatatatataggttttgatgtaaaataatttaatctgttatattaaaaaaaaaaaaaatgtagatcaCACAAAAATCTAACTAGGGTGTTGCGAGACACATGCTTCATACAAACACTAAGGAAACCTGAACATACTAGCCAGCGATGGATGTTTTCATATTGAAGATTAATTCTAATTAGAGATTTCtaaaaacagatttcaatttttttttttttttttttggtatggtTCTACTCATTCCCAGCACCTATTAAACTGGATTACCATTTTTACcttcttttcagtttcaacGAGTTGCTTTATCAATAACACCCTGCTACATCTACAGTGCatcccttcatttttttttttttaaacaaagcttAATAATAGTTGCACTTTGGTGATAAGATGTTTGCAAATTGGCCCCATTGTCTCTCGATAAGCATTCAGTGTTAGTGGTGCTCTGGTCCCTGGGTTACTGGGAGGATTGACCTCATCACGCTGGGGGCGGTGCGATCAGTCATTGCAAACCCTACAGCTCAGCAGCCCAGTAACTGGAGCTTCATTGCAAAACCCGCCTTTGctgtaaacacacaaagcagTATTCCTACGTAACTTGACCTTCATGACACATCAGCTTTCATGGAGAACCTGCCTTTACACTCCCGATGTTAAATCCTCCGATTGAGCCTGAGTCACAGTTTGCAGCCTATCTTGCGAAAGGAATTACAATGCAATTAGTGTTATCTATCTATTAGGATCTTTACGTTAATGTTAGctagcctttttttttaaattatattattttttacatcaaCTAACCAAGGCTCTTGTgagttagttttctttttttcctttggaaaaaaataaaataaataaaacaagatctAAAGGAAACAACAGTTCAAACAGCCTGTGAACCAGGCGTTGAGATACAGAGAAACGTTCCTTGCTCTTCAGGGGAAAGGGTGTGTAGACTACTGATCAATTATATACGAGGGTGACGTCACAAAGGAGCAGCAGTAGTATGGTGTTACAGAGGTTCTACAAGTTTAAAGTGTTCTGTAATAACATTTTCCAGTTCTCCCATATGAATCTGTAAGCACTTCTAGGTTCCTTGATTCACATTAACCCAGTTCTATGCCAGCACATTCCCTCCCCATCACTCTGGCCTGTAGCTGTACTGTCCTGCTTTGGGGGATACTGCCAGCTGAGAGATGGTCCTGGGTAGCCTATCAACTCTTAATACAGGATCCTCTCCTGGGTTTCTGTGTACTGTCCCCTGAACAACCAAATACTTAGTGTACAGCTTCTAGCACAGTGGCCCGATGGTCTCTGAGCTTGTAGACTACTGGTGTGTGTACTACATTTCacgcattatatatatatatatattttttttttattattatttttttaaaggatgaaAAGCTTATCAAATCATGTATTTCTCTGCTTGTATAATGCATTATGTGAGGGGGTCATATCCATGTACTGTAAATTCAGGTGGACAAAAAAAAGACTACTaaggaaaacatatttctataaataaagtaaGTTGAAAATTCTGATGTTCTTTTCTCCCACCCCATGATTTGCTTATTCACAACTTCACAAGCCTCATTTATCCCGTGAAAAAGTTCTGCGGAACAAGGGAAGTGGATTTCAAACCACCCAGCGCAGTTCAGACGGTCATCTACCCACGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145083 lncRNA downstream 18050 8642346 ~ 8648687 (-) True AMCG00018344
TU145037 lncRNA downstream 147534 8517334 ~ 8519203 (-) True G115807
TU144949 lncRNA downstream 233167 8430126 ~ 8433570 (-) True G115732
TU144791 lncRNA downstream 798111 7860316 ~ 7868626 (-) True G115599
TU144788 lncRNA downstream 824029 7842337 ~ 7842708 (-) True G115596
TU145110 lncRNA upstream 189022 8861873 ~ 8862377 (-) True G115874
TU145202 lncRNA upstream 527949 9200800 ~ 9215817 (-) True G115949
TU145342 lncRNA upstream 808059 9480910 ~ 9482152 (-) True G116058
TU145352 lncRNA upstream 854641 9527492 ~ 9527736 (-) True G116065
TU145440 lncRNA upstream 1101455 9774306 ~ 9777349 (-) True AMCG00018390
AMCG00018344 mRNA downstream 17930 8641896 ~ 8648807 (-) False AMCG00018344
AMCG00018341 mRNA downstream 35149 8625877 ~ 8631588 (-) True AMCG00018341
AMCG00018343 mRNA downstream 64003 8597093 ~ 8602734 (-) True AMCG00018343
AMCG00018334 mRNA downstream 125698 8519603 ~ 8541039 (-) True AMCG00018334
AMCG00018329 mRNA downstream 197108 8463319 ~ 8469629 (-) True AMCG00018329
AMCG00018342 mRNA upstream 5013 8677864 ~ 8684648 (-) True AMCG00018342
AMCG00018340 mRNA upstream 14858 8687709 ~ 8688230 (-) True AMCG00018340
AMCG00018347 mRNA upstream 20508 8693359 ~ 8698933 (-) True AMCG00018347
AMCG00018346 mRNA upstream 27560 8700411 ~ 8717402 (-) True AMCG00018346
AMCG00018353 mRNA upstream 151791 8824642 ~ 8905411 (-) True AMCG00018353
TU144767 other downstream 892845 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2023465 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2043124 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 2715682 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3299983 5356846 ~ 5366754 (-) True AMCG00018251
TU145207 other upstream 566961 9239812 ~ 9258202 (-) True AMCG00018364
TU145480 other upstream 1246195 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 1456709 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1634739 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1662350 10335201 ~ 10342089 (-) True G116306

Expression Profile