RNA id: AMCG00018348



Basic Information


Item Value
RNA id AMCG00018348
length 606
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00018348
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8813019 ~ 8847184 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGCCAGAGTTCACCAGGGTTCCCAAAGCGCAGCTCAGGGTCCTCAGTGCCTCGGATGAGCACTGACGAATTGGACACCCCTTCTGACTACTGCTCTGCCCCCTTACCTCCAAAGCACACTGTTTTTGTGTACATCCGGATCCTCGATAACGAGTGGAACGTGTACCGCCGCTACACGGATTTCCGAGCCCTGCATCAGCGACTGAGGGCTCGCTTCCCACAGGTGGACGCTTTCCACTTCCCGCCGAAGAAAGCCATCGGAAACAAGGATGCCAAGTTTGTGGAGGAGCGCCGGAAGCAGCTGCAGAGTTACCTGCGCAGCGTGATGAACAAGCTGATCCAGAGCCTGCCGGAGTTCACGGCCTGTCCCACCAAGGAGACCCTGCTGAAGCTGCTTCCCTTCTGCCTTGCCTTCCCGTTGCATGACTTTGAAATGAGGCTCTGCGACGACAAGAAAATCAAACCCAAATTGAAGGACACCCCCCAGGCCTCGGATACCGGAAACAAGCCGACCCGCACCCGAGTGGGCTCCAGGTTCCCAAAACTCAGTCGCAATCAGAACAGAGAAGCAAGAAACCCGGAGCCCCAGAGtggtgacctctga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145024 lncRNA upstream 108116 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 440192 8352077 ~ 8372827 (+) True G115678
TU144888 lncRNA upstream 465183 8294416 ~ 8347836 (+) False G115679
TU145109 lncRNA downstream 14897 8862081 ~ 8862511 (+) True G115873
TU145111 lncRNA downstream 21358 8868542 ~ 8870342 (+) True G115875
TU145137 lncRNA downstream 189146 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 351693 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 380826 9228010 ~ 9230141 (+) True G115939
AMCG00018349 mRNA upstream 2545 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018345 mRNA upstream 81091 8718740 ~ 8731928 (+) True AMCG00018345
AMCG00018338 mRNA upstream 146360 8650411 ~ 8666659 (+) True AMCG00018338
AMCG00018337 mRNA upstream 166911 8643855 ~ 8646108 (+) True AMCG00018337
AMCG00018335 mRNA upstream 189365 8604721 ~ 8623654 (+) True AMCG00018335
AMCG00018350 mRNA downstream 84906 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018351 mRNA downstream 90431 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018354 mRNA downstream 172819 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018356 mRNA downstream 277129 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018357 mRNA downstream 308997 9156181 ~ 9156453 (+) True AMCG00018357
TU145016 other upstream 118300 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 690848 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 918570 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2862002 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4049114 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 352473 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 392627 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 714977 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 761893 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 3119063 11966247 ~ 11970778 (+) True G116585

Expression Profile