RNA id: AMCG00018349



Basic Information


Item Value
RNA id AMCG00018349
length 396
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00018349
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8783629 ~ 8810474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aTGGCCGTTAAGGTGGCGGAGATGCATGGCGAGCTGATTGAGTTCAACGAGAGGCTGTACCGCTCCTTGATGGCCAAGGACCACCTGATTTCCCAGATGCGGCAGGAGCTGATCGACCTGCGGGGCCCGGTGCCTGTCTTTGATGTGAGTTCTGAAGCCAGCGTCCTGCTCAAGGTCCCTGGAGATCTCAGCCAAACTTCAGAGGACCCCAGTCTGTCAGACTTTGAAATAGCTCAGCGGGCCCTTATCAACGTGTGGATCCCCTCCGTGTTCCTACGCGGCAGAGCTGCCAACGCTTACCATGTGTACCAGATTTACTCAGCCTGCGGGTTGGAGGCGACAGCTTTACGGCGAGACCTGGAGCGAGACAAGtCCACTCTGTTTTACGTGAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145024 lncRNA upstream 78726 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 410802 8352077 ~ 8372827 (+) True G115678
TU144888 lncRNA upstream 435793 8294416 ~ 8347836 (+) False G115679
TU145109 lncRNA downstream 51607 8862081 ~ 8862511 (+) True G115873
TU145111 lncRNA downstream 58068 8868542 ~ 8870342 (+) True G115875
TU145137 lncRNA downstream 225856 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 388403 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 417536 9228010 ~ 9230141 (+) True G115939
AMCG00018345 mRNA upstream 51701 8718740 ~ 8731928 (+) True AMCG00018345
AMCG00018338 mRNA upstream 116970 8650411 ~ 8666659 (+) True AMCG00018338
AMCG00018337 mRNA upstream 137521 8643855 ~ 8646108 (+) True AMCG00018337
AMCG00018335 mRNA upstream 159975 8604721 ~ 8623654 (+) True AMCG00018335
AMCG00018336 mRNA upstream 190908 8553588 ~ 8592721 (+) True AMCG00018336
AMCG00018348 mRNA downstream 2545 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018350 mRNA downstream 121616 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018351 mRNA downstream 127141 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018354 mRNA downstream 209529 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018356 mRNA downstream 313839 9124313 ~ 9130120 (+) True AMCG00018356
TU145016 other upstream 88910 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 661458 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 889180 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2832612 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4019724 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 389183 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 429337 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 751687 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 798603 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 3155773 11966247 ~ 11970778 (+) True G116585

Expression Profile