RNA id: AMCG00018351



Basic Information


Item Value
RNA id AMCG00018351
length 378
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00018351
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8937615 ~ 8941636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCAGTGTCGTCCCGTACCCGTGCACGTTGGGCTGTTGTTTTGttggcttgtttttgtttttgttgttgtttgtcccCGAAGACGTCTGCACGGAGCTGCCCACCAGACGCGTAGGTTATGACTGCCTGCAGGCGATGGGAGGCAGATTGGTGGAGGAAAAGAatggagagaagagagggatgTGTTTTGTCATGGATCTCCGGTGCACCTGGGGTCATACGCCTCAAGGGCTGCTGGAAATGACGCTCAGCATACCAAGATATTTTTGGCTTCGCTTTGAGGAACTGTGGTGTCGTCGAAATGTGCTAAGCAAGCCGGTTGTCACAGAGCTGGCATGTATTGGACGGCACCGCTTGCCTGTCATCTCTGTCGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145111 lncRNA upstream 67273 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 75104 8862081 ~ 8862511 (+) True G115873
TU145024 lncRNA upstream 232712 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 564788 8352077 ~ 8372827 (+) True G115678
TU144892 lncRNA upstream 589779 8343130 ~ 8347836 (+) True G115679
TU145137 lncRNA downstream 94694 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 257241 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 286374 9228010 ~ 9230141 (+) True G115939
TU145254 lncRNA downstream 495396 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 503974 9445610 ~ 9447020 (+) False AMCG00018368
AMCG00018350 mRNA upstream 13 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018348 mRNA upstream 90431 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018349 mRNA upstream 127141 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018345 mRNA upstream 205687 8718740 ~ 8731928 (+) True AMCG00018345
AMCG00018338 mRNA upstream 270956 8650411 ~ 8666659 (+) True AMCG00018338
AMCG00018354 mRNA downstream 78367 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018356 mRNA downstream 182677 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018357 mRNA downstream 214545 9156181 ~ 9156453 (+) True AMCG00018357
AMCG00018355 mRNA downstream 220850 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018358 mRNA downstream 258076 9199712 ~ 9206776 (+) True AMCG00018358
TU145016 other upstream 242896 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 815444 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1043166 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2986598 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4173710 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 258021 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 298175 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 620525 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 667441 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 3024611 11966247 ~ 11970778 (+) True G116585

Expression Profile