RNA id: AMCG00018358


Basic Information

Item Value
RNA id AMCG00018358
length 6292
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00018358
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9199657 ~ 9206776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACACACAGACTGTGCGGCTGTCAGGCGTGTTTCTGGCTTCGTTTCTTTTAagacttgtatttgtatttaattttttctaaaTACTTTTGATTGAAGGGTTCATTATTATCGACATGTTGCTGTTCTGCCCGACttgtggaaatgtgttgattgtAGAAGAGGGGCAGAAGTGCTACCGATTTGCCTGTAACACTTGTCCATATGTGCACAACATTACGAGAAAGGTCACCAACAGAAAGTACCCCAAGCTGAAGGAGGTTGACGACGTACTGGGTGGGGCGGCGGCCTGGGAGAACGTGGACTCCACGCCAGAAACTTGTCCGAAGTGTGAGCACCCTCGGGCTTATTTCATGCAGATCCAGACGCGCTCGGCCGACGAGCCCATGACCACCTTCTACAAGTGCTGCAACCAAATCTGTGGGCACCGCTGGAGAGATTAAACTGCTGATTTCAATTCCCGGACTCATCTCCAGCTGCTATTCAGCCCCGCTGTTTTCAAGTGTCGAATAAGGTTTTATTTGCAGTATAATGCTTTAACACCTAGAAGTGAGAACTGTTATTGCAATACAACCAGGAAGATGTTGAGAAACCATAcgagtttttgtttgtttgaccaAAATCCCACTTCCATACTTCAATGAAGGTATGCATCAAAGCCTGCTAAGTATAATAAAGAGTAAATCGTCACACACTGTAATCCCAGTAATGGTCTAAACAGGGATTGTGTGTAACAGGATGATACCATCTGATGGAATTGGAATtgggtttgctttttttgttttttaaatctgtgataGATGGTAGTCCAGATGGGAGGCTCAGAACAACGCTTTCATGCTATTGAGATGAAGGACAGACGTTGCAGCTTTAGTACCTTGCAATTATGACTTCATggatgcaaaaaatatatattaaaaataaacgtGTCAAAGATTGTAATGAGTAATATGAGAGTCGTGTATGTATATTATCGATCTACCTAATACAATTCCTAGTCTTTTTTTGCCTTAAACAGAAGGATTATATTTACTACAAGCTGCTAGAACTTGATATACCTAGGTCTcagtgtttcaaataaataattgaaatgcattacaagaaaaagaagcataacattgattgttttgtttttattattgttaaaagaataattttgtattctatGCAACAGTTGTGGTCATTCATTTTACACAATAGTATAATTTACATGTCAACATCAATACAAACATGGAATACCATGGATTGGATTAAAGATATTAATATCTGTGCCTCTTCAACCCAGCAATAACTTTACTGCCTTTCCACAAGACTGCAAGCCACTTAATGTTGCATATAGAGAGGTTTAGAGCTTACAAAGTCAATGGGGACCAGCCTGGATTTGCAAATATTCATAAAAAGCATGAACATGCACTGCAAGTTACAGACAATGTTTACTAGATATCATAATCAGATTTTTCATCAGGTGCAGTTGATAGGATTCCTGGATAGTTCATGCTGGATAGTTAACaacagcaattattatttagaaaataaatacattacataaataaataaataaattacttaacactggaaactgttttaaaaataaaataccaaaaataaagcTCAGCGGGTTATATTTAGGTATCCAACAGTCAAAAATATCTCTATAACCCTTAATCTTAAGAAATACACACTGGGAGGTATAGCAACctctttttcctttatttcaccTTATTTCTAGAAACTGATTCAAAAAGACTTGGTATAGTCCACAGTTCCAGCTTGACCACcttagatatgtgtgtgtgcttgcacTGCAACTGAAAGTTAGATCAATTTGAAGTTGGCATCTTAAAATGCTGTAAGTACTGCTGATGGAAGCACAGAACTACAGAGTGAACCGAGTCAAACTCAACACCGGATGTTGATCTAGCGAGATTAATTGATGATTGAATatcaaatacagtaaattaagTCTTACTgtagaaatattttgtttctagaAATTATTAGTTTTGTAACACAGCAGGACAAAAACAATATGGCATTCCAAAACCCTCTACAACATTGCAGTTTGTCATATCCAGTAGACTCCATATTTTAGTGCTCCCGTCCCATACATTATTTAAGATATACTTCCAATGGATATGTTCCATTGACAGTCGatgcattatacatttacaacttCTTACTTCTTGGACTGCAtactatatacattatacagGTGGGTTAGGGGTATCGAAGGCGGTGAAGTTGAACGCTTGAACACTTAATATGAAAACTCAAACTTCACTTGGCAATAAGCAATTGCAGCCCATGGCAAGAAcgaaacaattaaaacagacaatttACAGCCAGCGTCCTCTGACAGGGGAAACCCTGCGGGCTCCATATTCGATTTAAGAAGAGGATGCGCTACCAGCGATCTTCAACGGTATGCGCCTGCAGGATTGGATCTTTAATTCACAAAGTCAGCCGTGTCAGGTCAAGTTCCATGAGACAGGTCTGCAAATGGAGATCGGTTCAAGTGGAGCCTAGGTTCTGAGCCCACAGTTCTAGACCACCTTGTCGTGAAGTAAATAGCAGGCTTTACACAAAGCTGGTGAGTAGGCAGCCtgcagggggggagggggaaggcACAGACAGAACTGCTCTACACAGAGACGGACGCGACAGTGaatgtcatgtgtgtgtgtgtgtgtgaggagacAATGCTAGAGTGGAGGGCGACAGAAACACAAGTTCTTCTcagactaaaaacaaaaacaaacgcaGCCGAGTCTGAGAAGAGCACggctgtacattttatttttttgttttcgtttttttgtttaaacattaccATTGGTATGTAGAAAACCACGACAGGTATTATTCACAACACAAGTAGCAAAAAAAGCGTGGCTGATTAGTAACAGATGTCTATTAAAGAGATCTTGTGAATCCACCTGTGGCGTTAATGATGAAACCTCCCGATTTTCATTTCAGGTGCAAAAAGTAGATATAAACCTAGCACAATGGTGAATACCCTTTCACTTCTAGCTGGTAGGTCTTGACCTACATCACATTCATAATTAACTAAAACCTCAGTGGTAATCAAGGGTGCTTTTGGATGCTAACGTAGCTCTGTGAATGTCATGTTCACCAACCCCACCTGAGTAAAGCACTTTCTGATTCTCTTTAAGACAGATTTTGGTTCtctatataaagtatataaaacAGACATCCTCCACCACCTGGATTTTAGTGGTGGTCCTCAGTGAAAGACCCAAAACAGAGGAGCAGATATTTAGCGGTGAGGCCTAACAGATGAAAATGTCACACCTTCTACCGAGGGTAAGCACTGCCTCAGTAAGAAAGCGTAATGTCGAGGTCTCTCCCAGGATCTGGTACCCGTTAAgaaggcttttgtttttagtgtACCTACGGCAAGCGACAGGGACAAACAGTATGTTAAAAAACAGTTCCCATGCTAAGTGTACTATGAATCAGTTACAGCAAAAGACaaggaaatatatacattataacacaatcattattttaaaattccatGAGGGCCTATGCTTATTGTCCACTTTCATTATcaacagtataaaaaaaaaacaagaatatgaACAGGCTGGTCAGTAATCTCCCTTGAGCCTATGTGGCAAGACGCAGTGAACAGATGCTGAACAGGGCAGTGCAGTCAGTGACACACATTAGATTCACCGCACAGACTGGACATATGGCGAGAGCAAAGCCTGCACCAGATTATAATGATGTCATGCAGGGGGGCAGGATGGCATGACAGCTCTCATGCAAATTTACTTTTACAGCAGAAGAGGTCTGTCCTTGGTCACAGTTAGGGTTTCCACCTGAACAGTTACCGTGAAGAAATGCTTTTAACTACTTCACTTGTGCATGCTTTCTGAAAAGATGTTTCAGCCCTGGAAATCACTATCAGACTGGTGCAAACTATGtccattaatatgaataattgaCTGAATGGAAGCATTGCAAAAATAGTACATCAAGTCAGATGGCTGATTGTGTACATGTTGTATCATTTTCATAAACAGAATCAAAAGGAACAGGCCTGGGAATCAGTAGACAATCAGTCAACACAAGACCAAAACATTCCTGTGGCCATCCttcttacaattaaaaaactgttttacatgATGAATAACATCTTCTACAGATCTCGGTGACTTTTCCATTATAAAGTACACAAAGTCGCAGTGTTTGTTGGTATGAATTAAAAAGGCCTTGAACACTTAGCAGGCGCCAGTTTTTACTAACCCTGAACTGAATTGTCACACTCACTACTGGCTCTCCTTTTTACCCCGACTGAAAAATATTCAAACAGGAGACCACGCCACAACAGAAAGGTCCAGTGGGCTCCCCtacttaaatacatattaaacatattaaacaggAATAAACAAGACCGAACGTTACAGAGCACAACACGTCtgcttaaaacaaataacagaaatattaaaatgcccACAAAAACAacgaaaacataaaacaaacaggacaGGACTTTACTGCACAATTAACTGGTACATCTTCATGTCATAGCTGCTCTCAAAGTTCCTTCCCTTAGTGCCGGCATTTTCAACCCTGTTCCCCTGTCTCTCCTGGTTTCTTTCTACCTCAGCTCACAAATGCTTATGTGAACTCTTAGTTAGAGTTGCTGACTGACTGTCTTGTAGTGCTGAAACAGCTGGGGAGTTCAGTGTACATGTAAAACTACCATAGGAGTGACttgaaattaacttttaatGGGCTGAAAACAGCTACAAAAGTCTAATTAGGCCAACAATGAGTTCAAGGGAAGTTTTGATGAGGGAAGTTCAGCTGGAACAACCAGCAGGCAAACGAGTATGAGCACGAGCACGGTTGTAAAGCCCATTCATTATTGCATATATATCTTCTTGCTCTAGGTATTaaaatttcaaatgcaaaacgAAGTGAAAGACTGGctggtatttgttttcatttgaatactaacaaaacaaaagattaaTCTCTAGcagtcattattatatattttagttatcTAATTCTTCCAaagatcttttttttatgtctacTCTAACAGAGAACAATATACTTTAGTAAACATGCTGGTGAAACAATTAGCAGGTGGATCTTCAATCCAGATTCAAAGAGCTGCACTGCTTGATGTCAAACACAGTCTTCTGCATCAGGACTCATTACCATCTCTAACCTGAAACACTAAATTGTGCAACCCACaggaacaattaaaacaaaggttttaaacatgtcaaaataaataaatctcaggTTCTTCCTTCACTATTTTAACAGTAAGTTATACTTCTACTAACATTATGTTTGCAGCAGGACTGATGATGTCACTAGCTAATTtgctgttctttgttttttgtatatgcCAAAAGCCCTTAATATTAAGatcaaaaacatgaaacaatcTCATTATGATATGCTGTCAGGGtgatgtgtgtatgcatttcacAACCACATAAGCCAGTTGTTCAGTTAAGAGAGTCATTCGGAAATAAACACCACATTTttttcaacaacaaacaaaaaacgctTGTGTGTGACAATGCGTCTGCTCTCGTCAGGTGAATACAAGTGGATGGCCCTTGTTGCTGGTCTTCATATTAGTGTGGGATTCACATTTGAGGCCACACTGCTATATGATGTGGTTTACAATTTGAAAATCGTGCCCTGTACCGCTATCTCTGCTTCAGTCCAACATACACTATATTACCTAAAGTGTTGGACTAGAAAAACAAGTTCTGTTCACAAAACACCAGTTGGTACCCAATGTCTGACATCATCCTGTGGATATACTGGGCCATTCCTCCCACAGGGCAGAAGTCCAGTCCTATACAACCAGAGCCAGGCTTGTCCAATGACTTAAGGTAACAGTGTATACTGGATCCAAAATAATCTGCCTGAATGAGAtagactttaaaaacacactgacacgGGTGGAAACTCCCTCTGAACTAAATCCAGCTGGAATTCATACCTCTGAGCACTAACCAGAGACGGACAGGGACATCCCTTTGAAACAGTTGGTTGCTTCCCATAAACTACCTTCTCAAAAGAATTAGATGAACTTGTGGAGATGTAGTTATAGAAAGATTCAGGTCctacacaaaacaatcaaaaacaactaataaaattaaaatattgccaATACTACTGTATCAAGGTGCAATCGGTTTCAGTTCACGccacaatatacagtactgtgcgaaagttttaggcaggtgtgaaatgctgtaatgtaagaagaatgctttcaaaaatagacat

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03019 RPC11, POLR3K; DNA-directed RNA polymerase III subunit RPC11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145180 lncRNA upstream 272 9198877 ~ 9199440 (+) True G115931
TU145137 lncRNA upstream 163129 9036330 ~ 9036583 (+) True G115896
TU145111 lncRNA upstream 329370 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 337201 8862081 ~ 8862511 (+) True G115873
TU145024 lncRNA upstream 494809 8703157 ~ 8704903 (+) True G115796
TU145190 lncRNA downstream 21234 9228010 ~ 9230141 (+) True G115939
TU145254 lncRNA downstream 230256 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 238834 9445610 ~ 9447020 (+) False AMCG00018368
TU145266 lncRNA downstream 265721 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA downstream 265721 9472497 ~ 9477108 (+) False G116002
AMCG00018355 mRNA upstream 11953 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018357 mRNA upstream 43259 9156181 ~ 9156453 (+) True AMCG00018357
AMCG00018356 mRNA upstream 69592 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018354 mRNA upstream 177814 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018351 mRNA upstream 258076 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018360 mRNA downstream 34586 9241362 ~ 9245234 (+) False AMCG00018360
AMCG00018359 mRNA downstream 52678 9259454 ~ 9285418 (+) True AMCG00018359
AMCG00018366 mRNA downstream 84556 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018365 mRNA downstream 147927 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018368 mRNA downstream 232881 9439657 ~ 9447144 (+) True AMCG00018368
TU145016 other upstream 504993 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1077541 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1305263 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 3248695 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4435807 4761518 ~ 4763905 (+) True G115049
TU145192 other downstream 33035 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 355385 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 402301 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2759471 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3309027 12515803 ~ 12519881 (+) True AMCG00018491

Expression Profile