RNA id: TU145182



Basic Information


Item Value
RNA id TU145182
length 1157
RNA type TUCP
GC content 0.41
exon number 3
gene id AMCG00018358
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9199657 ~ 9206776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCAGTACAAGAAACATCCTATAAGTCATTGTTTCAGGGCGGACCCATAAGGATGTAACACACAGACTGTGCGGCTGTCAGGCGTGTTTCTGGCTTCGTTTCTTTTAagacttgtatttgtatttaattttttctaaaTACTTTTGATTGAAGGGTTCATTATTATCGACATGTTGCTGTTCTGCCCGACttgtggaaatgtgttgattgtAGAAGAGGGGCAGAAGTGCTACCGATTTGCCTGTAACACTTGTCCATATGTGCACAACATTACGAGAAAGGTCACCAACAGAAAGTACCCCAAGCTGAAGGAGGTTGACGACGTACTGGGTGGGGCGGCGGCCTGGGAGAACGTGGACTCCACGCCAGAAACTTGTCCGAAGTGTGAGCACCCTCGGGCTTATTTCATGCAGATCCAGACGCGCTCGGCCGACGAGCCCATGACCACCTTCTACAAGTGCTGCAACCAAATCTGTGGGCACCGCTGGAGAGATTAAACTGCTGATTTCAATTCCCGGACTCATCTCCAGCTGCTATTCAGCCCCGCTGTTTTCAAGTGTCGAATAAGGTTTTATTTGCAGTATAATGCTTTAACACCTAGAAGTGAGAACTGTTATTGCAATACAACCAGGAAGATGTTGAGAAACCATAcgagtttttgtttgtttgaccaAAATCCCACTTCCATACTTCAATGAAGGTATGCATCAAAGCCTGCTAAGTATAATAAAGAGTAAATCGTCACACACTGTAATCCCAGTAATGGTCTAAACAGGGATTGTGTGTAACAGGATGATACCATCTGATGGAATTGGAATtgggtttgctttttttgttttttaaatctgtgataGATGGTAGTCCAGATGGGAGGCTCAGAACAACGCTTTCATGCTATTGAGATGAAGGACAGACGTTGCAGCTTTAGTACCTTGCAATTATGACTTCATggatgcaaaaaatatatattaaaaataaacgtGTCAAAGATTGTAATGAGTAATATGAGAGTCGTGTATGTATATTATCGATCTACCTAATACAATTCCTAGTCTTTTTTTGCCTTAAACAGAAGGATTATATTTACTACAAGCTGCTAGAACTTGATATACCTAGGTCTcagtgtttcaaataaataattgaaatgcattacaagaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145180 lncRNA upstream 217 9198877 ~ 9199440 (+) True G115931
TU145137 lncRNA upstream 163074 9036330 ~ 9036583 (+) True G115896
TU145111 lncRNA upstream 329315 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 337146 8862081 ~ 8862511 (+) True G115873
TU145024 lncRNA upstream 494754 8703157 ~ 8704903 (+) True G115796
TU145190 lncRNA downstream 26424 9228010 ~ 9230141 (+) True G115939
TU145254 lncRNA downstream 235446 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 244024 9445610 ~ 9447020 (+) False AMCG00018368
TU145266 lncRNA downstream 270911 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA downstream 270911 9472497 ~ 9477108 (+) False G116002
AMCG00018355 mRNA upstream 11898 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018357 mRNA upstream 43204 9156181 ~ 9156453 (+) True AMCG00018357
AMCG00018356 mRNA upstream 69537 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018354 mRNA upstream 177759 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018351 mRNA upstream 258021 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018360 mRNA downstream 39776 9241362 ~ 9245234 (+) False AMCG00018360
AMCG00018359 mRNA downstream 57868 9259454 ~ 9285418 (+) True AMCG00018359
AMCG00018366 mRNA downstream 89746 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018365 mRNA downstream 153117 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018368 mRNA downstream 238071 9439657 ~ 9447144 (+) True AMCG00018368
TU145016 other upstream 504938 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1077486 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1305208 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 3248640 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4435752 4761518 ~ 4763905 (+) True G115049
TU145192 other downstream 38225 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 360575 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 407491 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2764661 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3314217 12515803 ~ 12519881 (+) True AMCG00018491

Expression Profile