RNA id: AMCG00018359


Basic Information

Item Value
RNA id AMCG00018359
length 6221
RNA type mRNA
GC content 0.48
exon number 15
gene id AMCG00018359
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9259454 ~ 9285418 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGGACGCTGCTGGCTGCCCGCGTATGTGGCGCGACACCCTGTTGCTGGGACGGAACACAACAGCCACCgtctttcctgtttgtttatgttCTCGGCAGTTTTCGGGTTTTAAATCGTCACATCTTGCGGACTTTACCCCCATTTTTGTGGACATTATCAATGTAACGCAGAAGAGATTGCCGTCAACGCCTGAGAtctggagagagaaaaacatcgAGCATCAACAACATTAAGAAACCCAGAAATCCTCCATCATGTCTGACTGATTCTTTTGCCCATTTATTTTCGCAATCGTcgtcattgttattattgtattcctCAACCTGGAGGATCTCATTGAGTTTTCAAATAGAAAAGGCTGTCAGTAGTGgcattacagcattttttcgGGCACTCAACGTTTAGAGGTTAGCGAGAAAGATGGGGTCGATACTCAGCCGGAGGATCGCTGGGGTTGAAGACATTGATATTCAAGCCAATTCAGCCTACAGATATCCCCCCAAATCGGGGAACTACTTTGCCAGTCATTTTTTCATGGGAGGGGAGAAGTTTGACACTCCACACCCTGAAGGGTATCTGTTTGGGGAAAACATGGACCTCAACTTCCTAGGGAACAGGCCTGTACAGTTTCCATATGTGACCCCTGCACCTCACGAGGCTGTGAAGACCTTGAGGAGTCTGGTGAACATCAGGAAGGACTCGCTGCGCTTGGTCAGGTACAAGGATGACTCTGACAACACCACAGAGGAAGGGGGGAAGCCGCGGGTGCTGTACAGCGTGGAGTTCACCTTCGATGCTGACGCGCGTGTGGCTATAACTCTGTACTGCCAGGCGTACGAGGAGTTCTCCAATGGGATGGCCGTgtACAACCCCAAGAACCCTGGTATGGTGTCCGAAACGGTGCATTACAAGAGAGGGGTGAGCCAGCAGTTCTCCCTGCCGTCCTTCAAGATCGATTTCTCCGAgtggaaggaggaggagCTTAACTTTGACCTGGACAGGGGAGTGTTCCCCATTGTGATCCAGGCTGTGGTAGATGAAGGAGATGATGTCATGGGACATGCACATGTTCTTTTGGCAGCCTTTGAAAGAGTGGATCGCGTCAGCTATCTGCTACAGGAGATCTACgggattgaaaacaaaaataaccagGAGACAAAGCCCTCAGATGATGAGAACAGTGACAACAGTAACGAGTGTGTGGTGTGCCTGTCGGACCTGCGGGACACACTGATCCTGCCCTGCCGACACCTGTGTCTCTGCAACTCCTGCGCCGACACCCTGCGATACCAGGCAAACAACTGCCCCATCTGCAGACTGCCTTTCAGAGCTCTGCTTCAGATCCGCGCTGTCAGGAAGAAGCCCGGCGCGCTCTCCCCGGTGTCCTTCAGCCCAGTCCTAGCACAGACCATGGACCATGACGAGCACTCGAACTCGGACAACATCCCTCCCGGTTTCGAGCCCATCTCCCTGCTGGAGGCTCTGAATGGCCTGCGCTCAGTGTCCCCTGGGATCCCCTCTGCGCCCCTGTATGATGAAATCAATTTCTCAGGGGGCCTTGGTGACTCCCTGCCTCTGACAGGCCGCCAACTGGGCTCAGTGGAGCGCTCTGGAGACAGCGGCCTGCAGAAGAGCAAGGCCAGCAAGTCCCCAGACAGACCCCTGCGCTCCCCCTCGTCCCCCATCCAGGAGGAAGACGAGGAGAAGCTGTCCGAGGTGTCCGATGCCCAGCCCCACGCTCTCCTCTCTAGCAGCCCCACGTCCGCCGAGACCACTCCGGCTGGGGAGGCTCCAGAGTCCGTCACCCCTGATGAAGACGAGCGGCCGCGCTCCGTGGGGGAGATCCTGCAGGACTGCAGCAGCGAGCGCAGCAGCCTGACAAAGGCTGAGAGCGACTCCCCGCTGGAGCTGTCCCTGCCAGGCTCATCCGAGTCCACGGAGAGCCTCAAGAGCCAGAGCACCAACAGCTCGAGCCAGCCCCTCCTCTACCCCCCGAGCAGCCTGCACCTGGAGGACGAGCAGCTCACTCCGTAATgccagcccagcccagctcaGCCCAGCCACACCCAGCCCTGACCTGCTTCTTCGAAAACTGCCCGTCCCCTCCACCCTCTTCTCCTCTGACAAAGTATAACCCCCTCCCCTCTTCCAGCCCCTGACCTCCTCTCCATGGGCCAGCCAGTACATCAGGGATTGTGGTCAATTGGAGCTTTTCCTATAATTAGAAGGTGCTCAGTTCAGACAAGGTTGCAGAAAATAACCCTCGTTGGGAGACTGCTTCATCCTTCCCACAGCTGCTTTAAGCGGTGGTTTTGAAGAAGTCGAAAACCTGTTTTCACCTGGGGAATGGCATTACTTGGGTCGGTATGGCTCATCGTGACTGTAATTGACAACAAACCCTGCTTCCCAGATGGATGGCACCTTCCCCAAGTCTCAGCTCAGCCCCTGGAGTGGCCTGCTCATTGAGTAGCAGTACAGCTCCACGGGCTGGACTCTCTTCTCCTTTCCACTCCTCCCCTCCCTTTCCTAGACCTTCAACAGGTAGCGCTTGCTGAAACCCACCCCCTGTACAGCAGCCCATGTTTCTGACGGAGACTCAACACACAACGCCAGACAGTGGGGCGCGGTTCAGACCCCTCCCCACACTGCCATTGCCTTCATTACACAGCATCTCAACGCACCACTTCCTGCAGGTGTGTCTATGGAATGTCATAATCATTAGTGAGGTAATCCCCTTGTGTTGTTGATGATAAATGGAGATAGATAAATGCTGCACTCCCATATTTAGTGCTTTAATACTATCCAGGGGCAACTGTTCAGTAAAAGTCACAACAATGCCCTTAAAGTTAGTAATATGTGTGATACGATCTGTACGCACACACAGGAGGTGATTTTCTGGGAGAGAATACGGTGGCATATTCCTTGTCTGGAATAGGAGAGTGATATGGTTGCTTTAAGAATCGGAAAATGATTCCCAAGTCTCGCTTCTTGATCTACAGCTATTAATCTAAACATCACCAAAGTGGGAAATCTACATCTTCTGTATAGTCACCTCAAGCTGACCTCCTCAATGGTACAGGCAGAAAACTGTGAACACCTTTGTACTACATATCGCTAATAATTTCAGATGGTGAAACACAACATCCGTCGTCCTGATTAATTATATCTGTCATGTTTCATTTctccttcctttttttctttctaatatgAACTTTTTCATATCCTGTTTCTTGTTGTCATCGTCACCTTGATCCTCGGTCGATCAATACCCGTCTGTGAATAGAAAAGGGCGGCTTCTACAGCAAGGATACGTAAAAACCAGCATTCTTTATTTAACAGTCGAGAAGATGATCCAGCACTGTATTACAGCTGTGCAGAGAAGGCGCAGCGACTCATTTTACTGTTCGACCTGCTTCAGGATTTTGGAATACCATCTACACAGCTGATCATTttgtaaaccatttaaaaataaaaaaacataattctatTAACTTTTTACATGAGATAGTGGCTCTTGTAGCCTATGACCATACCTGTACAATACACGTGTGACTGTTTGTAGTGTGCTGCCTCTCGTACATTGATGTAAAGCATTTCGCTGAAAGTACTGTTCCAGCTCACTTTTCATAagcactgtatttgtgttttcctaCGCTCTGGAAGGATCGTCACATTTCAAAGACTTTATATTGGGTACCAGGTTGTGTGCTCAAATGTTTTTCACGCTCTCTGATGCAGAGATGAAATGCTCTCAATGAATAGTGCTTTAAGTGACCAGTGTACACTGCCCACCTGTCTGCTATTATCATGCCCCAGTCTCAGGATATCGGCCCACTACACCTAAGATTTCTTGTATTCCTGACAGCTTTGCTATACGTAAGGCTCTGCTGGGTGGTTGAGTGAGTACAACAAGCAGAAATTAATCTATATCACActtctaatgtattttaaaatgtaggccCCTGGTGAAGGGGACAAATCAGAAAGCAGTGTGTTCATCTTCACACTACACTACTATTTTCCTACCTTGACAATGGCTAGCTGGGCAGTCTTTGGTTCTGTTTCCATATCCTCTTGCATATAGGTACATGTGCCTTTTGAAGACAATGATATTACCTGGCTGCTAGTTGTTTTGTGCTTCTGTATTCTCAAGCTGCAAGAAGATACCACAAAGGAGGAATTCATATAGTTTTGAACTGTAGTAGACTTAGAAGACCTTGGCATTAAGACTTAACTCGGGGGGGCGTCACCTTAAACTGGTGCACAGTACCTgggctgtgtctgtctgcttcAGCCCTTCTCTGTACGACTGAAATGTAGAGGAAGAGTAGGTTAAATACTGAGAATAATACTGCATTAGGTTCTGCCTTCACTTATTCGCTGTTTGTCTGTATAAAGAGTATCTGCATCCTCTTTCTGCGTACATATTTACTCTCCCTTCAGTGCACACagggaaatgtaattatttttctgctaGAAATGGTGTGAGAGGTGTGAGTCTGTCTTTTTCTGCATGAAAAATGCAAGTAAGGTTGTCCTTTCTTTGCCAGCTGGTGGACCAGTATAGAAGTTTTGAAATCTATCCCAAAAACTTATGTTAATAgatgttttatatattcattagaTGACTGCCGTTTTAATGAAGTAGATCTCACCATTTCACCAGTGAGGACGGGCCAGATGGTACAGTTGTTATTGTACCTGGGATGGTGATGAGACATCCCTCAACGCCACAGGCTCACGGTCACGCTGGGATCAGTTCAGGTCTTTGGGATCCACTTTCCATAACCCTGACTGGGATCAGATACAGGGCTCATGACATTTACCAGATCACTTGTGTCTTTTTGAGTTGACATCCTTTAGCTACTCCAGGCTACGTGGGTGGTCATGTGGCCTTATGCTCGCCCTGCCCCTATTCCAAAGCATGTTGCCAGAAAATATTGCGTGTGAAGCTGGTTATTGTCCTTTGAGCCTTAGAAAACAAAAGTTTTCTCCCTGCTTCCCCCGTCTGTGTGCTGCTTTTGTAAAGATAAGTCAATGATTTACCTGGAGGTCTAGGCTAATTACTGCAagagcatgtttttaatgtagaaCTGTACACTCTGTAGATGTTCAGCGATGTGTTATTTATCAATCTATTATGACTATGTTATTTGCCTTTCGATGTTTTCTTTTGGTATTGCTTTTAATATGCCTTCTGTCGGTGCTGTGCTTAGAAAATGCTTCTTAACGGCATCGTATATCTGTAAATTAGATTTGGCATGTGCATCCTTAGAGCTGTAGATCTTTTATTTCTTGCtgctttgatttgcttttgGTAGCAGTTGGCTAGGGGCATAATTGCATActgaagtgagagagagagaaaccggcattgatttattattgGCTTCCCTAGCAGAGGGAGAACATCAGAcgtatatactttttaaaagtattttactgtTAAGGAGTACAGAACAGGATTTATGTTGTCCACCCCCAGTAACTTGGTGGTGTTTGAACTGTAGGATAGGAGGCACAGGGACTTTTTAACCTCTCTGCTGTGAAGAGCCCAGTGAAAAGCTTTCTCCAGATATATATACTGGCTCTCAGTGAGCTGATGGAAATGTCAGTGTCTGTTTCCACATCAAAAGGAGCTGCTAGGTGCTTTGATCAGTCCTGGAGTCGGACTGGCTGAGGATGTTCAGTGATGGAGCTCGATTGAGAGGCCGAGCTTGTTTGCTTGTTGTCTGGAAAACACAGCAAAGTTGCTTCCCTGTCATGGAGAGGGTCGTGCTTTTATCAACAAAGCCGAGCAGGCAAaatatttgattacaaagcAGGCCTAATTGAAGCCGCTGCAGCCGGCATCAGATATTCAACAGCAGGATTGTGTTACATACAACTTTTATAACCAGGCATGACGTTTtaaaagccccccccccacatgcTTTCATTCATGCTTcctgtgtacagtatataaagaCCTTTCTGCAGTTTCCGTCACAGTCAACTCCACAGCCTAAATCTCAACATTGTAGCTATGCCACAAGTACGTTTTTTTGAAAAGGGGATTTAAAAACCAGAAGCTACGATTTGCCACCAGTCCATACGTGCTTTGAAACAGGCTGTGAGATTTCCAACATGGCTGCTTTGTGTTTAGAAGTGCGTATGTGCTGATGCATTTTTTCTCTAccattgtctttttatttaacttCTATGAAGAGATGGGggagt

Function

GO: NA

KEGG:

id description
K10604 MGRN1; E3 ubiquitin-protein ligase MGRN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145190 lncRNA upstream 29313 9228010 ~ 9230141 (+) True G115939
TU145180 lncRNA upstream 60014 9198877 ~ 9199440 (+) True G115931
TU145137 lncRNA upstream 222871 9036330 ~ 9036583 (+) True G115896
TU145111 lncRNA upstream 389112 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 396943 8862081 ~ 8862511 (+) True G115873
TU145254 lncRNA downstream 151614 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 160192 9445610 ~ 9447020 (+) False AMCG00018368
TU145266 lncRNA downstream 187079 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA downstream 187079 9472497 ~ 9477108 (+) False G116002
TU145270 lncRNA downstream 197948 9483366 ~ 9486146 (+) False AMCG00018369
AMCG00018360 mRNA upstream 14220 9241362 ~ 9245234 (+) False AMCG00018360
AMCG00018358 mRNA upstream 52678 9199712 ~ 9206776 (+) True AMCG00018358
AMCG00018355 mRNA upstream 71695 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018357 mRNA upstream 103001 9156181 ~ 9156453 (+) True AMCG00018357
AMCG00018356 mRNA upstream 129334 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018366 mRNA downstream 5914 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018365 mRNA downstream 69285 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018368 mRNA downstream 154239 9439657 ~ 9447144 (+) True AMCG00018368
AMCG00018369 mRNA downstream 195534 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018374 mRNA downstream 226962 9512380 ~ 9513236 (+) True AMCG00018374
TU145192 other upstream 17639 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 57868 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 564735 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1137283 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1365005 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 276743 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 323659 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2680829 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3230385 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3967925 13253343 ~ 13255794 (+) True G116832

Expression Profile