RNA id: TU145207


Basic Information

Item Value
RNA id TU145207
length 1925
RNA type TUCP
GC content 0.40
exon number 5
gene id AMCG00018364
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9239812 ~ 9258202 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttgctCAGCCGGCTGTAATGGTGGGTCACTGAAAGCGAGAGAGCGACAGAAAGAAGGGAAAAACACACCGGGGGCTGAATCGCAGGACGAGCATTAGAAGACGCGCTGTATCACAACAAGCCGGCGACTATGGATGAACTAAAGCACCAAGTAATGATCAACCAGTTTGTCTTAACCGCTGGATGTGCGGCGGATCAGGCGAAGCAGCTTCTGCAAGCGGCACATTGGCAGTTTGAGACGGCGCTCAGTGCCTTTTTCCAAGAAACCAATATCCCATACAGTCACCACCATCAGATGATGTGCACTCCAGCCAACACACCGGCGACGCCCCCCAACTTCCCTGATGCTCTGACCATGTTCTCGCGCCTCAAGGCCTCGGAGAGCTTCAACAGCAGTAGTCCCAgagagatgagggcCTGGACTGAAGGGCCACACACTAatagagaggggggagggggggtcacattttctcttttactgTCAGCCAGTAGGCTGGGGACTAGGGGAAGGGGTATGTAACCAAGGAACCAAGCAATGTGGACTATTATGGAGGGGAAAAACTAAActcacaccaccaccaccaatgaacacgcacacacaccgtTATAAATAATAAGTCCGCAACGGGAAgttttataaagtgttttttttttttttttttaatacataaaaaaaaaaaagtacaaaatctgtctataaaaaataaataaggatcaTGCTGCAAGTAACCCCAGGATTTTGTTCAAGGATCTTCAAAGAAGTGAACATGAATGgaaacacctctcatcacctttcttaacactttttatttctttttcctcAAATCTTTGCTGTTATTGAGGCCTGTGGTACCAGTGTATGCACTGCATCACTGAATtttcaaaaactgaaatgataaaCGAGAAACGTGGAGACATTTTTCTCCTGTGGCATGATGGGACACTGCTTGCCTCCACAGTCACCTGACTTATTCCTGCCAATCTGGGAATATTCTCTGTTGACAGCACTGTTCAGAATCCCACTGAGTTCTAGTATTTTTTACACTGGGCTCTGGCCGTCTCCACCATGGACAATACACTCACTAAGGATCTTTCTTTTTATCCCTAAGCAGGGTAAAGGGTTATGTATatggacatttaaaaaagacagattttgttttctgcaaacacatgcagatttaggcatttttaaatcatggtttattatttttatgatatttGGGAGGgttgtgattattttttgtggggtggggtggggtgggggttgggggtatCGAGCAATTGCTGAGGTGAAACGAAATGAGACTACTAGAAATGTGTGTAAACAGACTTGCCACTTGCATGATGTGTccaaatgtataacattttttttttaagtcaaaatgaagaaaaaatctGTCATGATTTAGCAttcttctaaaatgtattccaaataATGACTGGGTTTAATTTCCCTAAAGGTTGGAAGGGCCAGGGGAAgatatttatgaatttaaaaaaatatgcaatttcAGGGTCGCCTTTATCCCTGCAAatctgattttgtattttcattatcatttttgGCTGTCCATTTATTTGAAACGAAAAAAACTAAGCAAAATTGTCTGTTCAATGTCGGTTTCTGTTATGTCTtaaaaaaccaaacaagaaaagaaaactagaaCAAGACATTTTCAGTGAGATAGGTAATCCAGTAACCctaatttcatttgatttttgtttctttagtttttgtttctcccCAGTTTTGCACCCTTTTCTTATTGAATTATCTTAGGATTGCCTGTTCCTAGATCggttttcatgtatgtattttttttctccctctatGACTGTATTGATACCGTTCCCACAATATTTGTGGACTACCTAATTAACttatcatttttttgtgtgtttctaaataaatattgtatgtcCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145202 lncRNA downstream 23995 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 377435 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 566961 8666737 ~ 8672851 (-) False AMCG00018339
TU145083 lncRNA downstream 591125 8642346 ~ 8648687 (-) True AMCG00018344
TU145037 lncRNA downstream 720609 8517334 ~ 8519203 (-) True G115807
TU145342 lncRNA upstream 222708 9480910 ~ 9482152 (-) True G116058
TU145352 lncRNA upstream 269290 9527492 ~ 9527736 (-) True G116065
TU145440 lncRNA upstream 516104 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 526228 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 885223 10143425 ~ 10144599 (-) True G116236
AMCG00018361 mRNA downstream 22274 9207537 ~ 9217538 (-) True AMCG00018361
AMCG00018363 mRNA downstream 40344 9194038 ~ 9199468 (-) True AMCG00018363
AMCG00018362 mRNA downstream 46871 9190764 ~ 9192941 (-) True AMCG00018362
AMCG00018352 mRNA downstream 323785 8909747 ~ 8916027 (-) True AMCG00018352
AMCG00018353 mRNA downstream 334401 8824642 ~ 8905411 (-) True AMCG00018353
AMCG00018367 mRNA upstream 102098 9360300 ~ 9380160 (-) True AMCG00018367
AMCG00018370 mRNA upstream 189282 9447484 ~ 9470583 (-) True AMCG00018370
AMCG00018378 mRNA upstream 230728 9488930 ~ 9490012 (-) True AMCG00018378
AMCG00018379 mRNA upstream 234025 9492227 ~ 9493398 (-) True AMCG00018379
AMCG00018375 mRNA upstream 265293 9523495 ~ 9526055 (-) True AMCG00018375
TU144767 other downstream 1465920 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2596540 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2616199 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3288757 5950421 ~ 5951055 (-) True G115320
TU144300 other downstream 3873058 5356846 ~ 5366754 (-) True AMCG00018251
TU145480 other upstream 660844 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 871358 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 1049388 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 1076999 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 1101927 10360129 ~ 10385216 (-) True G116307

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010210 True 1768 mRNA 0.45 4 NC_007123.7 20098851 ~ 20120702 (-)
grasscarp (Ctenopharyngodon idella) TU584413 True 259 TUCP 0.61 1 CI01000351 1234498 ~ 1234756 (-)
rainbow trout (Oncorhynchus mykiss) TU584413 False 4815 lncRNA 0.42 2 NC_048570.1 48532377 ~ 48587888 (+)