RNA id: AMCG00018365


Basic Information

Item Value
RNA id AMCG00018365
length 1986
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00018365
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9354703 ~ 9359686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cCAGGTCATCGTAAGCTGGCTGTGACTCAAAGCATTCCCTCAGTATGCAGTTGAAACTGAAGATGTCTACAGGTTAGTTTTACGCCACTTACATTGTTTCCttgttgtcttttcttttctcttatCTCAGTGACAAAACCTAATCCAGACACATGACTGGGATCTTAAAGCAGGGCCTGTCCGTGCCGTGTGTTCTGAACAGCTGGATACTCCGAGACGGAACCCGAGAGCGAGCCCCACAAATCTGCCCTCTCCCTCCGCTGGGTTAATCCCAAAGCCCACATGTCCTTGACACCTGAGTGCCAGTGATGTCGGAGGCGGGGTACGATGACCTGGTCTGCTGCCCCTTACTCCCGCCAGACTGGGAGTACGCTGTGTTACGCTCTACTGGAAGACCGGGGGGGGCTCCTCTCACGACTGGCGTGTGCCCTGCAGGTGTGCGGCCAACATGACCCAGCCTCAGCTGTGCGGCTCACCCTTCCTCAAGCCCTTCTTCCTGAAGACCCCTGTGAGCCGGCCCTACACCAACCGCCAGCGCCGGCACACCCTGCCGGCCAGCGAGTTCCGCAACCTCACCCCACAGGACGCCGTCAGCGTCTTCGAGATCGAGAGGGAAGCGTTTGTGTCGGTGTCTGGGGAGTGCCCGCTCACACTGGACGAGGTCCTGCACTTCCTGGGACAGTGCCCCGAGCTGTCGCTGGGCTGGTTCGAGGAGGGCCAGCTCGTAGCCTTCATCATCGGCTCCGGCTGGGACAAGGAGAGACTGGCACAGGAGGCATTGACTAAACACGTGCCCGACACGCCCACCGTGCACATCCACGTGCTGTCAGTGCACCGGCAGTGTCGCCAGCAGGGCAAGGGCTCCATCCTGCTGTGGCGCTACCTGCAGTACTTGCGCTGTCTGCCCGGCCTGCGCAGGGCCCTGCTCGTCTGCGAGGAGTTCCTGGTGCCCTTCTACCTCAAGGCCGGCTTCAAGGAGAAGGGCCCCTCCGCCATCAGCGTGGGGGAGCTGCTCTTCATGGAGATGGAATACCCGCTGGGGGGGGCGGTGTTCGAGCGGCGGAACAGCGGCTGTTAGCAGCGCGGGTCCCAGCTTTAGACTGGTGAGAACTTTGTATCCTTAGGGGTAGCGCTGGCTCCCCAGGTCACACACCCCTTCCCTCCCACAGGGTACCCAGTGGGTGAGACACTGTAACACCATCCCCTGCGCAGACAAGGACACCCCTGCACTGCTTCATATTTCCACAAACTGCAAGATGAACacattgctgtacaccagcactGCACCTACGCTCCAGCGTTGCTCCCCTAGGGTTTGAAACgaaacactgcactgcatgaACTCGGCAAAATGTTTGTTCTGTATGTAGTTCTCCTGGGGGTTAGGGGAGAATGCCTGAAAATGAAAGGTAGCCCTGATTTCCCCACACAGTATGACAAAAACATTGGGGTTCAAACACACACTCCATCCTCAGAATTGCCCCGATTGCTTTCCTGTTCAGCACAGCATGTAGTGCATCAACAGTGGCACCAGACCGGTGTGTTTCTGGATGCCAATGCACATATTCAAACCCCCCTGCAGTCAGTGCCCTTTGACGCACGGTCACCTGATTAAAGGAGAAACCGCAGTACGGGTTTGCTGTTTATctcaaaagtaaaaacattttgtgggtAATTGTGGTAATTGTGAAACtcgagtccagtccagtccaaagACAGGTAGTCAAATGTATAGTGTACATACTTGACTTTGTATaacaaatgtttgcatttttgtatctgCTTACACATTTCAGTGCAAGGTATTTTCTAAAGTGCTTATGTTGCTGATCGAAGAGGTCAAATCAACATGAGCTGTTACGCAGGAAGCATATTGTCCTAGTCTGTTGTAAGAAGCTTGTTCATACTTGAGACTTgtacatctgttttttgttcctaattcttctgtattatatacatttgctttgataataaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0009648 photoperiodism biological_process
GO:0007623 circadian rhythm biological_process
GO:0004059 aralkylamine N-acetyltransferase activity molecular_function

KEGG:

id description
K00669 AANAT; arylalkylamine N-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145190 lncRNA upstream 124562 9228010 ~ 9230141 (+) True G115939
TU145180 lncRNA upstream 155263 9198877 ~ 9199440 (+) True G115931
TU145137 lncRNA upstream 318120 9036330 ~ 9036583 (+) True G115896
TU145111 lncRNA upstream 484361 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 492192 8862081 ~ 8862511 (+) True G115873
TU145254 lncRNA downstream 77346 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 85924 9445610 ~ 9447020 (+) False AMCG00018368
TU145266 lncRNA downstream 112811 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA downstream 112811 9472497 ~ 9477108 (+) False G116002
TU145270 lncRNA downstream 123680 9483366 ~ 9486146 (+) False AMCG00018369
AMCG00018366 mRNA upstream 58798 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018359 mRNA upstream 69285 9259454 ~ 9285418 (+) True AMCG00018359
AMCG00018360 mRNA upstream 109469 9241362 ~ 9245234 (+) False AMCG00018360
AMCG00018358 mRNA upstream 147927 9199712 ~ 9206776 (+) True AMCG00018358
AMCG00018355 mRNA upstream 166944 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018368 mRNA downstream 79971 9439657 ~ 9447144 (+) True AMCG00018368
AMCG00018369 mRNA downstream 121266 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018374 mRNA downstream 152694 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018373 mRNA downstream 159981 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018371 mRNA downstream 185855 9545541 ~ 9561135 (+) True AMCG00018371
TU145192 other upstream 112888 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 153117 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 659984 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1232532 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1460254 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 202475 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 249391 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2606561 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3156117 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3893657 13253343 ~ 13255794 (+) True G116832

Expression Profile