RNA id: TU145252


Basic Information

Item Value
RNA id TU145252
length 1411
lncRNA type sense_over
GC content 0.40
exon number 1
gene id AMCG00018368
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9439657 ~ 9447144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAATGATTGCACTCAGAGGAGGGGAGCAGGAGAGAGCAGCTGGGTGCTACGGAGGAGATcaaatggaacaaaatacaGTGGAAAATGATTTTCTTATATAGAcgacaaaaaaaaaggatttggtTATTTATTAGTTGCACTACTATAATGGACAAATTCATAATACTCATTTTAATACCATTTCCCCTACTATCGCCATTTATGTTgccatatttatgtttttgtcttttaagaATTGTGTAAGAGCAGGGCATTGTTGAATGATTGTACTTACTCTGTAGTCACACCATGTGTTTATGCAGAAGATATCATCCTGGATTGAATGATGAAGGGACCAGCTGAGGAAAACCACTTAAATACAGATCTGGTATCTTCCAAGTCTTGTAGCCAGGACTGGAGAACTGGGAAACTCGTGATATGTAATGATTTGAAAGGGTTTAACATGGGCTGGCCAGCAATTACGCTCCACCTTCCCAATCTGTCTCCATATAAACTATGAAGCCACTAATCTATTCATTTATTCTTGctctaataatatatatttcccagCTAACAAATTGGCACAAGTGTAGGTCTGCATATTCACCCAGGTTATAAACCACATGTGACTGTAGAACCAGGAAAGTATCTGTGTGGTCTGCCTCCCATGACACGGCATGATTCCAGTTAAACCACTTTCACCTCACTTCTATTCTTATTCAATTCACATCACTTCTCATACGCCTGGAAGAGAAGAGCATGGCGCACCAGCAGTTAACATTGCAAAGATCATACCTTCTCTAGCAGAGGAAACAGCTGTCAACCATTAGGGCTGATAAAACAATCtcattttttgggggttgtttACATTTACTGCACATCTGCCAAGATTTGTATAATCATGCTTGAGTTCCCACATGCATTTTTcaacatatatgttttttttttcttagttttttacattaacaagcaggtttttgtttatatttttaatgtagcctGTGATTGTTATTCCTCCAAATTTCGGTTCGTTCACCGAGACAGTTGTGAACATACAGCGGTAACATCTGTAAAGCTTCTTTCTAttcgtttttttctctctctcccagtgtcATTTTGACCTGTACTGTATCTCCCACCTGTGTAGCTCTACAGAGGTCCTCGGCTAGGAGATTTCTGTTGGCTTTGCTCAGCCTGCAGATGTTCGGTACATTCCCTCTCGTCGGACGGCAGCAGATGTGCATTGCCCTGAAGCTGGCGTCCCTTTTCTGTAGTCTGAAGTGAAGGGGATCATCTGGAATGGCCATTACACTGTTATTCTTTCGGTGTGTTGTTTAATTCTAGCCTTGGTTGTATTTCACATTGGGGAATTTCAGCAGCCGTAATTGGAAGACTCGACATGGGATCGTTTATCATGATCAGGAGACTtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145254 lncRNA upstream 8307 9437032 ~ 9437303 (+) True G115990
TU145190 lncRNA upstream 215469 9228010 ~ 9230141 (+) True G115939
TU145180 lncRNA upstream 246170 9198877 ~ 9199440 (+) True G115931
TU145137 lncRNA upstream 409027 9036330 ~ 9036583 (+) True G115896
TU145111 lncRNA upstream 575268 8868542 ~ 8870342 (+) True G115875
TU145266 lncRNA downstream 25477 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA downstream 25477 9472497 ~ 9477108 (+) False G116002
TU145270 lncRNA downstream 36346 9483366 ~ 9486146 (+) False AMCG00018369
TU145282 lncRNA downstream 65294 9512314 ~ 9512754 (+) False AMCG00018374
TU145288 lncRNA downstream 80462 9527482 ~ 9527757 (+) True G116011
AMCG00018365 mRNA upstream 85924 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018366 mRNA upstream 149705 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018359 mRNA upstream 160192 9259454 ~ 9285418 (+) True AMCG00018359
AMCG00018360 mRNA upstream 200376 9241362 ~ 9245234 (+) False AMCG00018360
AMCG00018358 mRNA upstream 238834 9199712 ~ 9206776 (+) True AMCG00018358
AMCG00018369 mRNA downstream 33932 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018374 mRNA downstream 65360 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018373 mRNA downstream 72647 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018371 mRNA downstream 98521 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018372 mRNA downstream 115041 9562061 ~ 9564564 (+) True AMCG00018372
TU145192 other upstream 203795 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 244024 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 750891 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1323439 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1551161 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 115141 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 162057 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2519227 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3068783 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3806323 13253343 ~ 13255794 (+) True G116832

Expression Profile