RNA id: TU145295



Basic Information


Item Value
RNA id TU145295
length 619
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00018372
representative False

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9562061 ~ 9564564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGCCGGCCCCGCACGCCTGCAGTCTCTACACCACATGCGTGGGGGGGCACCAGAGCTGCGCTGGATCGCAAACCGGAGTCATTCAACACTCATTGCTTTGGAGAAGTCACTTTGACCAGCACACCTTCCAGCTCCAGAGGAGAAGATGGCAGAGGACATCAAGGAGAAGTTGAAAAATTACCGCACGGCCCCCTTTGACGCCCGATTCCCGAACCAAAACCAGACCAAGAACTGCTGGCAGAATTACCTCGATTACCACCGCTGCCAGAAGGCACTGACAGCCAAAGGAGCCGACATCACCCCGTGTGACTGGTACAAAAGGGTGTACAAATCAATATGCCCGCTGTCTTGGGTCAACAAGTGGGATGAACAGCGGGATGATGGAACCTTCCCTGGAAAAATCTGAATCGACGTTCCTGTGGAGTGGCTTCTGAAACAGAGCTGAAACGTGACCATGGAGGGGGCTGGGTTCGGCCTTCCCATACCTGCGTGCCCTGCTCGTCTTCGAAACCATGAATGTTAAAAGAAGATTCCTTAAAAACTGCCAATATCAGATTGTAAgcggttgtttttttttgtctcaggCAATAAATCCTAAGTGAATTAAGCTGCTGTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145288 lncRNA upstream 34404 9527482 ~ 9527757 (+) True G116011
TU145282 lncRNA upstream 49407 9512314 ~ 9512754 (+) False AMCG00018374
TU145270 lncRNA upstream 76015 9483366 ~ 9486146 (+) False AMCG00018369
TU145266 lncRNA upstream 85053 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA upstream 85053 9472497 ~ 9477108 (+) False G116002
TU145296 lncRNA downstream 322 9564726 ~ 9566691 (+) True G116019
TU145297 lncRNA downstream 4060 9568464 ~ 9569497 (+) True G116020
TU145298 lncRNA downstream 5823 9570227 ~ 9570461 (+) True G116021
TU145299 lncRNA downstream 6846 9571250 ~ 9571501 (+) True G116022
TU145301 lncRNA downstream 9578 9573982 ~ 9575102 (+) True G116024
AMCG00018371 mRNA upstream 1026 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018373 mRNA upstream 41174 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 48925 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018369 mRNA upstream 77327 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018368 mRNA upstream 115017 9439657 ~ 9447144 (+) True AMCG00018368
AMCG00018380 mRNA downstream 42257 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 111284 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018395 mRNA downstream 126422 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018385 mRNA downstream 144575 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018384 mRNA downstream 161378 9725782 ~ 9729487 (+) True AMCG00018384
TU145192 other upstream 320346 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 360575 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 867442 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1439990 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1667712 7893627 ~ 7894449 (+) True G115590
TU145312 other downstream 44673 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2401843 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2951399 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3688939 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3743494 13307898 ~ 13328272 (+) False AMCG00018520

Expression Profile