RNA id: AMCG00018382


Basic Information

Item Value
RNA id AMCG00018382
length 978
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00018382
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9587398 ~ 9595630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCCAGTGTGTCACGAAGTGCAAGAACCCATCGTCCTCGCTGGGCAGCAAGAGTGGAGACAAGGAGCCCGGCGGCAAAGCCCAGGGCAAGAAGGGCGGAGGAGGGCACAAGGAGGAGCCAGGCCCCATGGGAGGGAAGGCCTCCAGTGACCTCTTAGCCAACGGCACCAAGAAGATGGAGGTCACGGCCGACACCTTGCAGCCGCCCGCGCCCTCGGGAGACACCCGCAAGGAGGAGCTGCTCTCCAATGGCGAGGAGTGTTCCTTGCTGCGCATTGAGGAGCTCTTCCGTAACTACAAGGATGAACAGGACGACGCCATCCTCGAGGAGGGTATGGAGCGCTTCTGCATCGACCTGTGTGTGGACCCGGCCGAGTTCAGGGTGCTGGTTCTGGCTTGGAAGTTCCAGGCTGCCACAATGTGCAAGTTTACAAGGAAGGAGTTTGTGGAGGGCTGCAAGGCCATCAAGGCAGACAGCCTGGAGGGTATTCACACCCGTTTCCCCTGCCTGCTGCTGGAGGCACAGAGCGAAGAGAAATTCAAGGACCTGTACCGCTTCACCTTCCAATTCGGGCTGGACTCGGAGGAGGGCCAGCGGTCGCTGCACCGCGACATCGCCATCGCGCTCTGGAGGCTGGTGTTCACCCAGAACATGCCCTCCATCCTGGAGCAGTGGTTGGACTTCCTGACGGAGAACCCATCGGGCGTGAAGGGGATCTCGCGGGACACGTGGAACATGTTCCTCAACTTTACTCAGGTGATCGGGCCCGACCTCAGCAACTACAGCGAGGACGAGGCCTGGCCCAGCCTCTTCGACACCTTCGTGGAGTGGGAGATGGAGCGCAggaaaaaggaggaggagcaggaggagatcAAGAGGAGAGGCACGGagagctgcagcacagagaACCTGGCGGCCCAGGCGCTGGAGggccgggggggtgggggggcgggcgAGGGGGATATTGCTGACTGA

Function

GO: NA

KEGG:

id description
K17823 DCUN1D3; DCN1-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145352 lncRNA downstream 59662 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 105246 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 371581 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 725021 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 914547 8666737 ~ 8672851 (-) False AMCG00018339
TU145440 lncRNA upstream 178676 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 188800 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 547795 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 567648 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 573618 10169248 ~ 10169622 (-) True G116256
AMCG00018376 mRNA downstream 3113 9566379 ~ 9584285 (-) True AMCG00018376
AMCG00018377 mRNA downstream 43697 9530838 ~ 9543701 (-) True AMCG00018377
AMCG00018375 mRNA downstream 61343 9523495 ~ 9526055 (-) True AMCG00018375
AMCG00018379 mRNA downstream 94000 9492227 ~ 9493398 (-) True AMCG00018379
AMCG00018378 mRNA downstream 97386 9488930 ~ 9490012 (-) True AMCG00018378
AMCG00018381 mRNA upstream 17352 9612982 ~ 9675680 (-) True AMCG00018381
AMCG00018393 mRNA upstream 117688 9713318 ~ 9722901 (-) True AMCG00018393
AMCG00018391 mRNA upstream 136070 9731700 ~ 9734163 (-) True AMCG00018391
AMCG00018392 mRNA upstream 149369 9744999 ~ 9754152 (-) True AMCG00018392
AMCG00018394 mRNA upstream 165870 9761500 ~ 9766848 (-) True AMCG00018394
TU145207 other downstream 329196 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 1813506 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 2944126 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 2963785 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3636343 5950421 ~ 5951055 (-) True G115320
TU145480 other upstream 323416 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 533930 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 711960 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 739571 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 764499 10360129 ~ 10385216 (-) True G116307

Expression Profile