RNA id: AMCG00018383


Basic Information

Item Value
RNA id AMCG00018383
length 4110
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00018383
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9675688 ~ 9685520 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGTGGTTACGCATCGCCGTGTCTTAGATACAGCGGCACACACTGGACACGcgtttattttataatgcacaAAACctctatttattcattcattcgttTATTCAGGCGTCGCTTTTAAATGCTTATCctagacaagaaaaataaaggggCTATACAGACGCCAGAGACGGCCTGAGCGCCGGTAAAGGCCGCACTGCTCGGGCTCTGTGACGTGGCTTCACACTTCTACAACATGTTACTGGAAAAAGCGCACATACTCCACACACGTGCAGACACCGCACACAAGATCTACCAGATTGTAAATAATGGCTATTGCGATTGAGTCGCGCCCAAGAGAAATACTTCAATATTTGCCATGAAATAGCGTGCTCTGTAAGATATCTGTCAACGCGTATTTCGTTCGTATGTGGTAAAAGTCAAAAGGAGATAACACTGGATCTTACTCGTCCAGATCCACTCAATTGAATTTGATCTAACCAATCAACTGATGTCAATGTACAGAGTATTTTGAGCAGAccttaatgaatgtattttttgttatctGGGCGCAATAAGGGGTGGTTTCACAGCTCCATATAGTACTAGTCTTGGACTAGCCAATGTTATTTTAGCTGTGCTAGTTCACGATTAGTGCTAATCCAGGTCAAAGATATTAGCCGTGCTTGTGTAACAGAAATTGAGCTTCATGTCTATTGATACTTAGACAGAATATAGATATGTCCTATACTAAATGGTGTAAGACAATTTCACTAACCTGGGAAAATACCATACCACGAACCACAATATTATAGTATTTGTATAATACACagtattatttcttggcagacgcccttatccatggggatttacaaaacataaacgcaatacaaaatgcaaaaatacatcaaacattacaaattcagatttacataatacaaagcaaatcaaagcataatacattttacaaattccaatttacacaagtgaatacaataaatgaggtcttacatcctggtcATCCTAAGTAGAACAATTGTATCAGTCCcataaattacacaatgtactgtCACAAATGACACCATGGTACACTATGTACCAtagtaaactttcttatgggagaaaaaaaataataatccaggATTTAAACTGTATTACTTAGTCTACTTCTCATTGACACAATGTGTTAACTGTTCAAAGCTAGTAATTATAATTTctcagaagaaagttatttgatTGTATAAACTGTGTTCAATCTAACTCATGCTTTCAAATATTACACATAACCTTCAACAGTTATAGCCAATTTCCCTTGATCTCTAAAATATGATCCAGACGGTGTGTATTTCGCACACATAcgtttcttttttggggggtggtgggggtggtgttGTGCACAATACACCAGGaagtaaaaacaatgaaaggacTAGGGATTTGCTACGTGCAGACACGAACGGGTTAAACGGCCCTCCGCGAAGAGCATTTAAATAAAGCGGCGGCTCGAGTTACACGGTCCCGATTCAGAGGCGGAAATAAGGTCATTGACACGTGAAATGGACATTAAAAAGGATAAACTGCCAATGCCACCTCCCCACTTGCAAAAGAAAGCCATCAGGAGCGAAAGAAGTGTTCATGCTACACCCCGGATAAGCCTTATTCACACAATGTGGCGAAGTGAGGGCATTTCATTACCCAGGGAGATGCAGCAGCTACAGAGCCGATTCACTTCAATGATGTCCAGTCTAAACAGCAACTCCAAGGTGGCAGCATTCATGAGCACCACTTTAGGCCAGTACCTGGATGGCCACCCCTTCTTTGCCCTGGCTTTGCTTGTGTTCGGCGCCATGGCAGCCGTGCCCATTGGCCTCTTTCTCACATTTGCGATTGTCAGCTTCGTAACTGCTGCTTTTGGCTTCATCTGCTTGGAAGGGTTCCTGCTGTCTCTCGGGGCAGTCACTCTACTGTGTGTGCTTGGTGGCCTGGCTATCGTCGCCTTTGTTGTATCTGCTGTTCTCACTGCCTTCTATATCACCACCTACAGCGCTCTCAACTACTACTACAGTCAACGTTCATCTAGAATGAAGCAGGACCCCATTGGGAGCCCTTCAGGACCAGAGACAATCCCGTCCCCCCAGGAACAGAAGGGAAAGTAAACCAAGCCTCAGGACTGGGCCCACTGACTACACAGACACGGCTCCCACCACCTGGGTGTCAACCTCACAGGGCCTCTTGTGGGCTGTAGGATCTGCTAGTTTTTTTGGTCCAGCTTAGTGCTTTTAACTACTCCATTTGAACGGAGACAATAGTACAGTATctccttccttttctttctattttggCGTGTTCACACATTTCTGACCCTTGAAAGACCCTGGGGTGTGTGCTTTAAGTGCAATTCAGCAATTAAGCTGTGATTTCAGAGCCCACACATCTTAGGAGCCAGATTCCCCTGTAGCTTTCAAGGACTGACATGATAGACTCCTGCTCTATATGAATGTCACTACATACGGCTTACAGAGGCTCTCTTTCAtacttcatttttgttgtttttgttttagaggTAGTCTTGATTTAACAAAGCAGAAACTTTTTTGTTGCCTTGTTATCTCTGCTGCATTAATagtgatatttatttagaaatgattttaggctgtaatgtaatgaaatgccATATACTAACTGCAAAGTTTAGACTTTACGGAGTATGTACCTCAGTCTCACCATaagtataaataattatatttgtagttttctatacCTAAGAAAGAACATCCATCATTCACACACAGCTCATACAGTTACTTAATAATTTTGTATAGCTTTTTGATTTGGCTTTGTgttagcttattattattatttatttattagtagatgCCCTTTGCCCTACAGTTTTTGCAGTTTACTGACttagtttacacaagaagcaatacaaagtgctgTAATGCAaccagtacaaaatacaataggaTACATCCTAATAAAATTAGCTAAAATTATTGCAGACAATACAGGAGCTAAAGCGACTAGACAACTAGACAACTGCCATTCATCTGAGTCTAGCACTGAGCTTCATTCCAAGTCAAGTACTTcatagaataaaaacaaaagaaagaagcaAATCCTTGTTTAGTTGATGTAAATTGCAATTCAGACAGAGCAGTACAGGTAGTCCCAATGGATATGAGTTCCTACATTAGATCTGCCATTTCCCTTATGGGTGCTCTGAGTAGCCTGTGTGGTTACAGTGTCTGTGAAAGCACGTTGCAGGACGAGCTGTGTGAGAGATGTGCCAGAGACCACAGAACCAGTACATTATTACAGAAAGGAAACTGCACAGGGCCCAAGCAGAATTCCTGCAGCACGCACCATTAtgtggcagcagtgtggagtagaggtcagggctctggactcctgagtggaggggCGTGGGTTCAGTCctaggtgggggacactgctgttgtacccttgagcaaagtactttaACTAGATCGCTCCATAGACTgctgtataaatgagtaattgtatgtaaaaaataatgtgatgtattataacaattgtatgtcatcctggataagggcttctgctgagaaatatgatgataataaaacatCTTCCATCTCCCTTTACCAACATCCAATCTGGGTTGCTGACAGAGCTTCTGCTATGTGTCCGCCTGTGCAGGTGGGTTGTGCTGCAATATGGTATTTCGTATGTCGTCAGATTGTTTTATTGGGTCCACAGTGTAGGATCAGTGTAGGACTGCATGAGGAATGGTAACTGCCAAATTCAAAAGGCTGGGAATTAAAGTGAATGTGACCCTtctgcagttaaaataaaagGGCAACATGGGCAACTGTGTACATTCCTTATCTGACTTGCCCCCCTAAGGCATGGGGGAAGAAAGCATTTTGAGTTTCCAAGATGCATTTATAGgcaaaagtattttctttgatGCTTTAATGTAACCGACAACGTTTTGGTCACACGCTTATTTTTGTTAAGAACAGGGgtgcacaatatatttttaaaaagggccTTTCTCATACAAAATTAAGACGGCGGGCCAACCCAGAGGGGAGTGTTGCGCACCGGTAGAGGTTGTGGGGGTGCGGACGTAGTGCAAATTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145317 lncRNA upstream 56783 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 61907 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 96591 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 98088 9577396 ~ 9577600 (+) True G116027
TU145303 lncRNA upstream 98497 9576990 ~ 9577191 (+) True G116026
TU145390 lncRNA downstream 4245 9689765 ~ 9747387 (+) True G116088
TU145520 lncRNA downstream 318753 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 347033 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 358932 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 434657 10120177 ~ 10121558 (+) True G116214
AMCG00018380 mRNA upstream 62770 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018372 mRNA upstream 111124 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018371 mRNA upstream 114553 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018373 mRNA upstream 154701 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 162452 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018395 mRNA downstream 5306 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018385 mRNA downstream 23459 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018384 mRNA downstream 40262 9725782 ~ 9729487 (+) True AMCG00018384
AMCG00018388 mRNA downstream 48691 9734211 ~ 9740498 (+) True AMCG00018388
AMCG00018387 mRNA downstream 56079 9741599 ~ 9744668 (+) True AMCG00018387
TU145312 other upstream 62770 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 111284 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 433873 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 474102 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 980969 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 2280727 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2830283 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3567823 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3622378 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4334408 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile