RNA id: AMCG00018387


Basic Information

Item Value
RNA id AMCG00018387
length 2264
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00018387
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9741599 ~ 9744668 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttacaatttaggagaatattttgcacatttatgtataaatagctatatgtatttagtttatgatctctaaattaatattgtcaTTAATTTGTCTTATATTCATCTCTAGATTTTTCTGCACATTGTCAATTGTAAAATTACTAGAAGTACTTTAGACTGGTAAAGTAACTGGTATTATATGTTGGTCATTTTGGACAAAGCTATTggacacacaaatgtataaaagtgCAATAGAGCGATAGGacaacattgctttaaaattgtAGACAAACATTGTGTAAAACCCAGAAACAACAGAACATATGGAAATCTCAACAatagtcttagagaagttacaaagtaCAGGCACATTTATACAGAccaaacaggagagagagataataggatccacatgtctgtcccgtgatcaGTGGAAactcggtttctgcctgacagttagttaggaaaacccatatatggctGAACCGGGGAAAATTAAGGCTTaagtaatatttaatgtaaggGGGGCTTGTTGAAAGTATCAAGCCCACATTGTTGGATAAAACTGGTTCTTACCAGACTGTGTTCCCCTGcgcagggttgaactatagcacattACCATAACACAGTAAGACCATGAGACAGTGACTTTATTTACACAGActcacagggaaagaaatgcgcTTCTTCACCCACCATTTCCACTAAATAACTCAATCCAGGACATGCTTTCTTTATATCTTTATTGTGGGGTTATCCTCATACAAAATTGCTTAAAACCATCATTACTGATGATCCATCTAGAATCACTAATCCGGTTTCTCTTCCCACATCTGTAAACTCTTACAGGTATCTGAGtgtgagacaggagagaggaATTAAAGCCTTTGACGTGCAAAACTATAAAACTATTGAAAAGGGCAGTTTTTCTTTAGAGCTTAATAAAGACAAATCAAATGAACGCACGTTTTGCCCTCATAGCAAGCTGAGGTACTTCAGTCCACAGCCAGAGTCTATGCCTTTCGACCTCAATCATGGTTACCCTCACAAATACCTTCCCATGGGCAGCAATGTGAAAGATGGCGTGGATCACGTGCTGAGGTGGAtgttaaaggaaaaatacacCCTTGATCAGGGGTAAGGTTTTCTATTTATCAAGCACAGTATCACCCCAGCTAACCGTTCGTCCCAGCAACGTCGTGTAAGGCTGTAGTTTGTCGTGTGGGTGCATTTAGCTTAAATATGACCCCCAAAACAATGTTCTTGACCACACAAATGACGTTAATGTgttagtgatttaaaaaaacctgtaacatttctgattagaaacAGTAACCAAATGTCTTGCATGGTTAATAATAACTGAGAAACTGATAGTTTGAATAGATAGCTTGAAGCCTTTTTGTTGTATGACTATTGGAAGCATTAACATACTTCATTTACAAACTTAATTTGTATCAAACTTGGGCACACAAACTTGGACAGTGACTCTCCCAGTAACTTTCAGTCAGTAAAATTGTCATTCCTCGGTATCTTAGATGGCTTTGACATATAGAGTTGATGCACTAATGAAACCTGACGATTTCTCTGTTATCTTTGTGGCTGTCGGGTACCCATCTGAAAATGCTGGCAGGGATGCGAGCACTGTCTTCCTCACCTCTCGCGGACGGCTGACAAAGATATTCACTTCCCCTTACCAGATGAGGGGTGAAGGGTGGAAGATGGCAGTGACTCTGTACAGAAAGACCTTTTACATTGACGAGGTCAGGGACAGTGAGGATTCTAATTCATGGATGGTTTACTGGGGCTATAAGTTTGAGCAGTATGTGTGTGCAGACCAGCCTAATGGCAAACCCAACATCGAAGGTCATATTAACACAAGTGAAGCGTTCTACACTGTGGTGGAATCCAACATCAATAGCTTCAAGCTGCTCTTCTCTGGAGAGGTGGACTGTATGGAGGAGTGCCCCAAGTACCCCACAGCTCCCGGCTATTATGTGGAGatgaaaacatctttaaaaccAAACGGAGAGGACTTTTTTTACAGACACAAGATGCTTAAATGGTGGGCCCAGTCCTTTTTGGTTGGTCTCTCACGTATCTTTGCAGGCTACAGGAATACATCGGGGATTGTTCACAAAACGGAAATGTTTGAGGTTCAGAGCATTCCTGAGCTGTGCCAGaaaaacatacaaaactcTTGGGAACCTCAAGTGTGCATGAATTTCCTCTGTGAATTTTTGTCCTTTGTGCAGAAGGTTGTCACACAGGATAATCCCAGGTGA

Function

GO: NA

KEGG:

id description
K14845 RAI1, DOM3Z; RAT1-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145317 lncRNA upstream 122694 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 127818 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 162502 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 163999 9577396 ~ 9577600 (+) True G116027
TU145303 lncRNA upstream 164408 9576990 ~ 9577191 (+) True G116026
TU145520 lncRNA downstream 259605 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 287885 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 299784 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 375509 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 470719 10215387 ~ 10216789 (+) True G116264
AMCG00018388 mRNA upstream 1101 9734211 ~ 9740498 (+) True AMCG00018388
AMCG00018384 mRNA upstream 12112 9725782 ~ 9729487 (+) True AMCG00018384
AMCG00018385 mRNA upstream 30299 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018395 mRNA upstream 50021 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018383 mRNA upstream 56079 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018389 mRNA downstream 11078 9755746 ~ 9760627 (+) True AMCG00018389
AMCG00018386 mRNA downstream 24100 9768768 ~ 9774480 (+) True AMCG00018386
AMCG00018402 mRNA downstream 36932 9781600 ~ 9788774 (+) True AMCG00018402
AMCG00018399 mRNA downstream 80818 9825486 ~ 9833544 (+) True AMCG00018399
AMCG00018398 mRNA downstream 102233 9846901 ~ 9880691 (+) True AMCG00018398
TU145312 other upstream 128681 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 177195 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 499784 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 540013 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1046880 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 2221579 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2771135 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3508675 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3563230 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4275260 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile