RNA id: AMCG00018391


Basic Information

Item Value
RNA id AMCG00018391
length 1350
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00018391
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9731700 ~ 9734163 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcagatttccgcagttctgcacagatctgcataCTTTCGGCGATTCTATTGGTGGAGCGGCGCAAACCCacgcaaaactgcggaaatctgcgctacacgaacgagACCAGTGTTCTGCAACGAAGGAAATGCATACGTCATAAACTGTCGACACTCAGCTGgcaaaaatatagaaatgatAACAACCACAACATGCTATTTTTTGAAGTAGCGTTGTAGGCGTAAGATATTATAGAAATACGACTAAAGAAAGATAGAAGCATTGCCTCAACATTTAAAGATGATTTGTTCTGTGTCGCGATGGACAGAAAACGAACACTGATATCCGACACATTCAAAGTTAAAAAACGAAGATTTGGGACAGAAACTCCCCTTGGAAAACGTTCAACGTCACCAGAAGAGAGACCTCTGGATGTCGCAGCAACTCTGCAGTACCTGATGTCTCTTTTTCCTCGGAAACTTTTTAACGACACCCTCCCACCCATAGTTCTGAAACACCAGCTTTATAGTATCCATAAAGACAGGACGCTTGTCGATCGACAGCTGAGTGAGCTGAAGGAACAGGGGAAGCTGCTGATGTTCCAGTTGGGCTTTGACTCGGATGCCTTTGCACTGGTCTTTGCAGAGGATTACAAAAGCAAAGTCCTTGCGAGGGAAGCAGGGAGAGAGACTTTTGGGACTGTAGAGAAGTTCCTGGGCACGGTTTTGTCCAGCTGCTCTGACCTGAGCTTCAATAAGGAGAAAATGCTCAAGGAGTTTCTCTTCACAGACAAGGAGATAACACAGCTTGTGAAGTCTGGAGTGCTGACGGTGAGAGATGCAGGGAGCTGGTGGCTGTCTATCCCCAACACAGGACGCTTCACAAAGTACTTTGTTCAAGGACGCAAGGCTGTGCTTGGGAtgattaaaaaatctaaatacaatGAAGTCTTGCAGTCAGACCTAGAGTGCAGGAAGACCACCTCCCAGGTGAAGTTTGGGATTCAGTACCACATCCATGACATCATTGGTGCAGAGCTTGTGGAATGCATACCGACTACTTCAGGAACATTGCTGCGGTTTGTAGACGCATGAAAGTCACCATGGCTCTTTGGAAACTAATTAGCACTTGCTTCACTTTCATAGCAGATTCACAGCACTTTGCCAAACTTTGAACAGGAGTAAAATTGTACTCTGTTAAATCCATGTGTAATCAAAATTTGTTTccttaaatggtttaattttgaaagcagtttgtaaaataaagccTTATATACACACTGATTGTCTTGTATAATTGATGATGGGAGCAAGTGGAGCTTTTTAGGTGGTACCAGATAAAGGACTAATTAGCAATAGTGTAGATTCAC

Function

GO: NA

KEGG:

id description
K08880 STK19; serine/threonine kinase 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145352 lncRNA downstream 203964 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 249548 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 515883 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 869323 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 1058849 8666737 ~ 8672851 (-) False AMCG00018339
TU145440 lncRNA upstream 40143 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 50267 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 409262 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 429115 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 435085 10169248 ~ 10169622 (-) True G116256
AMCG00018393 mRNA downstream 8799 9713318 ~ 9722901 (-) True AMCG00018393
AMCG00018381 mRNA downstream 56020 9612982 ~ 9675680 (-) True AMCG00018381
AMCG00018382 mRNA downstream 136070 9587398 ~ 9595630 (-) True AMCG00018382
AMCG00018376 mRNA downstream 147415 9566379 ~ 9584285 (-) True AMCG00018376
AMCG00018377 mRNA downstream 187999 9530838 ~ 9543701 (-) True AMCG00018377
AMCG00018392 mRNA upstream 10836 9744999 ~ 9754152 (-) True AMCG00018392
AMCG00018394 mRNA upstream 27337 9761500 ~ 9766848 (-) True AMCG00018394
AMCG00018390 mRNA upstream 42016 9776179 ~ 9779545 (-) False AMCG00018390
AMCG00018403 mRNA upstream 210525 9944688 ~ 9960060 (-) True AMCG00018403
AMCG00018404 mRNA upstream 239122 9973285 ~ 9980996 (-) True AMCG00018404
TU145207 other downstream 473498 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 1957808 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3088428 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 3108087 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3780645 5950421 ~ 5951055 (-) True G115320
TU145480 other upstream 184883 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 395397 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 573427 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 601038 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 625966 10360129 ~ 10385216 (-) True G116307

Expression Profile