RNA id: AMCG00018393


Basic Information

Item Value
RNA id AMCG00018393
length 3485
RNA type mRNA
GC content 0.48
exon number 28
gene id AMCG00018393
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9713318 ~ 9722901 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatattgtcTTTAAGGGGTTATCCACTGCGCTGCTCCGTGTTGATGCCCGTCTTTCTATGGCTAGCTGTCGCTGGCTTGTCTAATGCGCGGCAAGTACGACAATCTGTGATTATGGAAACGACTGGAACCTCGTGCAGTGTTGATTATATGGAGACAGGGAGTGCTCCTGCAAAATGGGCTATTCAACTGAATGATGGCAAAGACACTCTTGTGATGACCATTTCAGAAGCTGAACAGGCTGGCTTCGAGTTCCCTTTTGTTCAGGGGAAGGCTGTGATCCGAGCATATTATACTGCAAAGGGACTGCAAATCTTTGGGGATGCTAACACCCAGTCCCTGTACATGGCAGACCTCACGTTTGCTCTCATTAATTCCCTTGGTGATGAGGATCTTGAAATTGATGTCTTGATGATCTGTGTTCCTGTAGTCTGCACAACAAATGCGGTGGATATTGGTATCCCAGCTTTCCCTGGTACATTCCTCCGTATGGATCTTGGTACAGAGACCTACCTTCCCTTTCAGAACTATTCTGATGTTGCCATTAGTGTAACTGCAAAAGGTCTGCTAATCTCCGTCAATGCCATGGGTCCCCAGATAGAGGAGAGGAACTGTGTTGATCAGCTTGGCACACCTGGACAACAGATGTTCTTGCCAGAATGTATGCTGACCTTTGCTATTAAGGGAAAGGAGTATTCCATGGTGTATGAGCCTTCATGCCCATGTGATGTAGGCCTTTTTCCTAATGACCTGTGTGAGGGTGACCACATGAAAGTGGAAGTGAGTCTCAATGTCACCATTCCTCCTCTGGAGCGGTCCTCTGTGCAGCTGAGGGATCCTACCTGCAAGGCTTCGGACACCGTTGGTAGCCTCCTGTACATTATTCCCCTCAATGGCTGTGGGACTACTTCAAAGATTGTGAATGGCCAGCTGATCTATGAGAATGAAGTATTTGCTGTGAAGACAATTGTGCAGGGAATGATTACACGGGACAGTGAGTTGACCGTGAGGTGTACCTTTAACCACAGCAGTTCTGCAGAGACTCTGCAGTTGGCCATGAGAACAAAAGCCCCGCCTCCCCCTGTTCTGGAACAGGGGGAGCTGATGGTTGTGCTTCGTGCCTATCCAGATGTGCAGTACAGCAATCCCTATGGAATCCAGGACTACCCTGTTGTGAAATACCTGAGGGAGCCAGTGTACCTGGAAGCACAGGTGCTCAACAGACTGGACCCCGATATCAAGCTGGCCCTGGATGACTGCTGGGCGACTGGCTCCTCCAGCCCTGACTCCCTGCCTCGCTGGGACATCATTGTGAATGGCTGTGAGTATGAGGATGACAATGACAAGACTGTACAACATCCCATGTCTGCATTCCAGAATCTACAGTTCCCAAGCTACTACAGGAGGTTTGAATTAAAGATGTTCACCTTTGTCTCAGGAGGGCGACCACTGACTGACTTGGTCTACTTCCACTGCAGCACTTTGATCTGTGACTCTAGGAAACCAGACTCGGACTTGTGCTCCAAGACCTGCCCCAGTGGATTTCAGCTGAGGAGAAGACGAGATAATGGAACCCACATCATTGACCAAGACTATGCAGAGAAGTGCCACTACTCTGTGAAAGAGGAAGATGAGGAGTTCTTGCTGTATGCTCTCTATGAGGCCTGTGGAGTACGCAAGGAGAATGGAAGCTTCTTCCTGGATGTGCAGCTGTCCTTCCTCTCTGAGGGGGAGCGTGTGAACCGAAGCTACAGCATGGTGTGTGAGCAGCCCAAATCGGATAATGGATTTGGGATGAAGGCAGGATCTAATCCATGTACTGAAGACAAGTCTGAGCCCCAGTTGGACTTCAGCTCTGCAATGCAAGTAGGAGACACTATGTGCAATGAGACTGGCATGGAGATACCAGTTCTGCAGACTATTCCTGACTTTAACTTTGAAGAGTCTTCTGGATTGATGTGGATGGTCTCTATTGATGGAGGACAGCCCATGACTTTGGCAGAGGGTACCCAGAAGGGATATTCATTCTCTAATGCTGAGGGCTTTATGATGATTGGGGCTTCCTTCTCTGCTGAAGGGGTCAAGATGTTTGTGGATGGGAAGGTCCATCTTGCAAATCTCACCCTGCATTATGATGCTGGCAATGCAAAAATCAACATCGGTGTTTACATGATCTGTATATCTGCTGCAGTGTCCTGTGATGCAGCCAGCATTCAGATATTGGCCCCTGAATTCCCAGGCACTTTTATTAAACTGGTCCTGGACACCACACAGTACTATCCCTTTATAAGCAGCCCTGGGATCTCCATCACTACTCAAGGCTCCTTAAGGATTTTGGTTTCAAAGGGCCATCCTTCAGTTAGAACAAGGGCCTGTAACCCAGACCAAACGGGCAGCCAGTCTTACTTGCCAGATGCTAAACTTTATTTTGACATGGAAGGAGCTCTAGCCACTACAGATCTCAATGCTACATGTCCCTGTACTCCCTCTGTAAAGCTGGTGCTTTGTGAAGATGGTATGATGACTTTTGAGGTCCTCAGCACCCTCACTGTGCCTCCACTGAACTTGTCCACGGTGAGACTGAGGGATCCATCCTGCAAGCCCACCATTGCCTCTTCATACAGTCTGGCATACAACATCCCACTCTTTGGCTGTGGCACAACCCTGAAGATGGTGCATGGGAAACTGGTCTATGAAAATGAGATCTGGTCAATGTTGAGGGACTTGAACCCAATCACAAGGGACAGTGTGTTCAAACTGACCCTCCGATGCTACTATGGTGCAAGTGATGATCCATTACTGAATATCTATGTGAACACCCTGGCCCCACCTGTGTCTGCTAAAGGAGAAGGGAATATTGCTGTGATCCTCCTTGCTTACCCAGATGTGCAGTACAGACGTCCCTATGGAATCCAGGACTACCCTGTGGTGAAATATCTGAGGGAGCTGGTGTACCTTGAGGTGCAGGTGCTGAACAGACGGGACCCCAATATCAAGCTGGCTTTGGCTGACTGCTGGGCAACTGGCTCCTCTGGCCCTGACTCTGTGCCTCGCTGGGACATCATTGTGAATGGTTGTGAATATGATGGGGACAATGACATGACTGTGTTTCACCCCACACTTCAATCTGCGATGCTGCAGTTCCCCACACACTACAAGAGGTTTGAGGTCAAGATGTTCACATTCATCTCTAAAGGACTCTGGCTGACCAACTCTATCTACTTTCACTGCAGTGCCTTGATCTGTGACCTCCACCAACCTGATGTAGAAGTGTGTGCAAAGACCTGCCGAAGTGGGGTCTCTGTCAAGAGAAGACGAGGTATTGAATCTTATGCCCTTGTACATGATGTGGTGGTAGCCAGCTTGCCAGGTCCATTCTCAGTGGTGGACAGAACTAAAGATGGATTGGCTTGACTGG

Function

GO: NA

KEGG:

id description
K19927 ZP2; zona pellucida sperm-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145352 lncRNA downstream 185582 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 231166 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 497501 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 850941 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 1040467 8666737 ~ 8672851 (-) False AMCG00018339
TU145440 lncRNA upstream 51405 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 61529 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 420524 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 440377 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 446347 10169248 ~ 10169622 (-) True G116256
AMCG00018381 mRNA downstream 37638 9612982 ~ 9675680 (-) True AMCG00018381
AMCG00018382 mRNA downstream 117688 9587398 ~ 9595630 (-) True AMCG00018382
AMCG00018376 mRNA downstream 129033 9566379 ~ 9584285 (-) True AMCG00018376
AMCG00018377 mRNA downstream 169617 9530838 ~ 9543701 (-) True AMCG00018377
AMCG00018375 mRNA downstream 187263 9523495 ~ 9526055 (-) True AMCG00018375
AMCG00018391 mRNA upstream 8799 9731700 ~ 9734163 (-) True AMCG00018391
AMCG00018392 mRNA upstream 22098 9744999 ~ 9754152 (-) True AMCG00018392
AMCG00018394 mRNA upstream 38599 9761500 ~ 9766848 (-) True AMCG00018394
AMCG00018390 mRNA upstream 53278 9776179 ~ 9779545 (-) False AMCG00018390
AMCG00018403 mRNA upstream 221787 9944688 ~ 9960060 (-) True AMCG00018403
TU145207 other downstream 455116 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 1939426 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3070046 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 3089705 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3762263 5950421 ~ 5951055 (-) True G115320
TU145480 other upstream 196145 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 406659 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 584689 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 612300 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 637228 10360129 ~ 10385216 (-) True G116307

Expression Profile