RNA id: AMCG00018394


Basic Information

Item Value
RNA id AMCG00018394
length 2324
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00018394
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9761500 ~ 9766848 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGCTGCACGAACGCGACCCAGTATTCTAGACTCGATTTGTTTACAATGTAGTTGAAACATCAGCTCCGAGGAGATATTGCACTTACTTGTTGTTATTGTATGCGTGTAGTAGACTAATAATCATACTTTAAAAGTCTGACCAAAGCATTTCTTTCCAGCACACATTCCCAGCAGCCCGGTGTGAAATGGCCGAGCTGCCGGCTCTGATCGGCGGGGCCGCGGTGGAGAGGCTCCTGCAGGTCCAGGACTTGGTGCCGCGGCTGGAGGCGGCCATGGCCAGCTTCTCCCGCCGCAGCGGCGAGGTGGTGCAGCCGGTGAGGACAGTGCTGCCGCTGCACAAATACAAAGGGTACCTGGGGCTGATGCCTGCCTACATTGCCCATGAAGACATTTTAGCCACAAAGATGGTGTCGTTCTACCTCCGAGATGCCAGCTCACCGTTGCCGGCCCATCAGgccactgtgctgctgtttgaTGCAGAGAGGGGCACCCTGAAGGCAGTGATGGATGGGAAGGCCATCACTGATAAAAGGACAGCAGCCATTTCTGCCATTTCTACCAGGCTGCTGAAGCCAGCCCAGGCAGATGTGCTGTGCATCCTGGGATCGGGAAACCAAGCCGCCAGTCACTACGAGGTCTTCACCCAGATGTTCGCCTTCAAAGAGGTGCGGGTGTGGAGTAGACGGAGCGAGAGGGCGCAGAGCTTCGCCAGCGCGGTGCAGGGCCCTGTCACTGTGTGCTCCACGGTCAGAGAGGCCGTGCAGGGGGCTGATGTCATCATCACCGCCACCATGGCCACTGAGCCGGTACTCCAGGGAGAGTGGGTGAAGCTGGGAGCTCACGTGAATGCGGTGGGGGCGTGCCGTCCGGACTGGCGGGAGTTGGACGATGCCCTGATGCGCAGCGCAGTGCTCTATGTGGACAGCCGTGAGGGGGCCAACCAGGAGTCTGGTGACATCATCCTGTCAGGGGCGGAGGTGTTCGGAGAGCTGGGGGAGGTGCTGAACGGGGCCAAGCCTGCCTTGCATGAGAAGACCACTGTCTTCAAATCTCTGGGGATGGGTATCCAGGACGCAGTGTCTGCAAAGCTGGTGTTTGACCTGTGGGCCGCCCAGCACTGACAGCATTGTGGACCACAGGGAGATGCCAGACTACACAAGAGCCCCTCTGACCTTTGACACAGGAACAGATTCAAATGGCACAGATGCTCTAGAGAGATAATAGTCCCTATGCAGCCACTAATATCACACATGATTTATCACAAATCCCTGCTAGGCAAGTCTATTcgggtttttgtgtgtgtagtctataaacattaaaaagtgtaaaattacATTCGAACATTTAGATATTTTCATAGTTTATTAATATCAACTGTGTACATGACTGacaatgtatattatatatacatcatatacaAATTGTcaatcataattatatatatgtatatataattgtcactgctttgttttttactttatcTATTCATTTTTGTAATCTACCTATATCTATCCATTTCTACAATCGTCTCATTAAAAAGGTAAGGATTGCAATTTAAGTTTTGAACAGCAAAGTCATTAAGGGATTTCATTAAGTTATTATATTACAAACAACTGAACAGCACTAAGAAATACTTAGTGAAATATACAAGTGAAACTACAATTATCCATGAGCATGTGGATTCGTCATGTTATCGGttgattaataattaaaccCAGATAAACCCAATATTGtgaaattactgtaattatgcTTAACAGTGTAACATTGCAGACATTTACAATCTCTGGAACAATTGGAGACATTCCTGCAATGTTCCAACATGCAGACTTTAAACCAAGATAATTAGGTTGGTCTTGTGTAAGTGTCTTAGCAGTGAACTCTACAGACACATGCGCAGAGCTGCTATAATGAAAACCCAAACGATGAAAACCATTAATAACCCACTCCAGCTACAGAGTTGACTGAACTGGCTGTGTTTACACTTACATGTTATATGTAACAAAGGCAAATTACAACAGTGGTATTAGAGTCTTGGAGAAGTAGGCAAGCCCATCTGGACAAAAATATTAACCACTTGTCTATGTTACACTACTGTTGTATTTCAGCCTTACCCATTTGAACTGGTcacttaaaacacaattaaaatgacagcCCAATGAAAAGGCAGCCATTGTTGATTGCTACAGCCCAACAGTCTAATGATCAAATTACCCACCAGACAGATGTAAAGCTGTTGAAAAATCTAAACTAATACCGTTATCTGTAATCTTGATATATAATGacactacatatttttttaataaagtaattgcAAGTTT

Function

GO:

id name namespace
GO:0016829 lyase activity molecular_function

KEGG:

id description
K18258 CRYM; thiomorpholine-carboxylate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145352 lncRNA downstream 233764 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 279348 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 545683 9200800 ~ 9215817 (-) True G115949
TU145110 lncRNA downstream 899123 8861873 ~ 8862377 (-) True G115874
TU145067 lncRNA downstream 1088649 8666737 ~ 8672851 (-) False AMCG00018339
TU145440 lncRNA upstream 7458 9774306 ~ 9777349 (-) True AMCG00018390
TU145444 lncRNA upstream 17582 9784430 ~ 9788579 (-) True G116136
TU145572 lncRNA upstream 376577 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 396430 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 402400 10169248 ~ 10169622 (-) True G116256
AMCG00018392 mRNA downstream 7348 9744999 ~ 9754152 (-) True AMCG00018392
AMCG00018391 mRNA downstream 27337 9731700 ~ 9734163 (-) True AMCG00018391
AMCG00018393 mRNA downstream 38599 9713318 ~ 9722901 (-) True AMCG00018393
AMCG00018381 mRNA downstream 85820 9612982 ~ 9675680 (-) True AMCG00018381
AMCG00018382 mRNA downstream 165870 9587398 ~ 9595630 (-) True AMCG00018382
AMCG00018390 mRNA upstream 9331 9776179 ~ 9779545 (-) False AMCG00018390
AMCG00018403 mRNA upstream 177840 9944688 ~ 9960060 (-) True AMCG00018403
AMCG00018404 mRNA upstream 206437 9973285 ~ 9980996 (-) True AMCG00018404
AMCG00018409 mRNA upstream 219326 9986174 ~ 10002150 (-) True AMCG00018409
AMCG00018408 mRNA upstream 237385 10004233 ~ 10014893 (-) True AMCG00018408
TU145207 other downstream 503298 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 1987608 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3118228 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 3137887 6618475 ~ 6623613 (-) False AMCG00018291
TU144435 other downstream 3810445 5950421 ~ 5951055 (-) True G115320
TU145480 other upstream 152198 9919046 ~ 9924582 (-) True G116165
TU145571 other upstream 362712 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 540742 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 568353 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 593281 10360129 ~ 10385216 (-) True G116307

Expression Profile