RNA id: AMCG00018405



Basic Information


Item Value
RNA id AMCG00018405
length 3143
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00018405
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10004273 ~ 10012673 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCCTTTTCTAGTTGCACTTCCCTCTTTGTTACTTCAGTTCAACAGAGAACATCAGCTGGCTCTGTCCCCGGCGCGCGAGAGAAAGGCAGTCTGGTCTGCAGTCTGACCGAGCACCAGCCAAGCCAAAATCActcgtttttttaatttaacgaCAAAGATTGTTTCTGGAACTTGTCAGAacagaaaagcaagaaaagtaACACAAAGTCCAGTTGCTCAGTAACAACCAACCGAGATGGAGGAGATGATACATGAGTGCTTTGTGTTGGATTGTCTCTCCCCTCAGTGACCCCTGGACTCTGTGAGTTGGCTGGCTATGGCAGGAGCTCCCAGAAGCCCTCTGGGCACACCACACTTCCTGGGCCTGCTACTCACACTCACCTGTGGTCAAGATGTGTGGGGCGCAGACCACTGCACTGTACAGGTGAGACAGCTGGCCCGGATGACAGTGGAGGAAAACGTCAGGTCCGCCACCATCCACTGTGACATCAATCCCACCAACTGCTCGGGCGATCGTCAGTTCTTCTGGTTCCTGTTCCTGGAGGCCTCGCACAGGGAGCTGAGCATACAGGGCCCCAAGTACACCTTGGCGGAGTCGTCTCTGATCATCAGCCCTGTCCTGCGCAACGATAGCGGCATCTACTACTGTGCGGTGGCATTCAAGGAATCCTCTTCGTATGCATCCAGGGGCACTGGAGACGGTACAGTCCTGGTTGTGAGAGACAGCTTCTACATTGCCCATCCTAAGGGGAAGGCGCTGCTTTGTACAATTCTGGTGCTGCTGGCCCTGTACAGTGTGGCCATCAGCATCCTGCTGATTCGTAAGAAGACCTGCCAACGTAGATGGACTCACCGAAGAAGCAGGGATGACACTTCTGGAAAGAGAAAGGGCGGCTCCACCAGGAGGAAACACTTTGGCGCCGTTGTGCAGGAGCTGTACGGCCGGAAGAACCCACGCAGGAACGCCAAGACCACCACCAAGACACACTCCCCTTCCAGCAAGTTGGAGGAGCCCCCCTCTCCCTCGGCCGCAGATGACATTTATCAGAACATGTGACACACGAGACAACAGCTGGGACAGAGGGTCAGTCCTCAGTGACATCACAAAGAGGGGGTGCATctccaggccacagcccagtcCCCATCCAACCCCCCTCAGGCAGGTGTACTGAAGACTGGATAGGACGACTGGTTAAATTAATCAGAACCACTGAGAGGATTTGTGAAAGTGTACCACAAAAAAGTGAAGATGGATTTTTGACTGAGGaaattattttgggggaaagtcaccttggaaaaacaaaactgaactgctATATATCAAAGCCTATGAGATTATCTGCTTCGGAGTCAAAAACTTGCACAGAACTGAGCTAACTTGTCCACCTGTGCTGTATTCAAAGGGAGGAGGGGaaacagagatacagagagtggatgacagaatgagagagagagattcagagGCAGAGATAAAGATGCACAGAGACAAAGAATGAGAGTAATGGAAGGAGCATCACCAAAAAtacagaggagagagatggagataaaacattaagcaaaaggtaaaaaaaaagacatgaagaGCAACAGAGACATGGGGAAAGACAGAAATGGAGGGatacacagaaagagaaaggcGAGTGGAAAAGAGAAAGACTGCTTCAACCTTCTTCAAGTATTCAGGGCATCCTATGCTTTtctaaagtaaatacataaactctTTGATAAATTGCAtgaatgctttggcaatactcaTACTGGTCTTGCCAATAAAGCgctttgaatttgaatctgaatttgaGAGAGACTACTTTTTTTGAGAGAGAAAGCAGTATACAGACAAGACAAAGAGAtacagagtgagacagagacagatggagACACATATGAAGTGAAAGAGATagattaaaaagtgaaattatgAGAGACATCAAGAAAGAGAGGGggcaaaagaaagagaaaaaattagATTTATGGAGTGAGATGGAAAGAGATACAGACAGAGGATGTGAGAGACACAGGCAGGCCGACAGCtaaagaaatccagagagagagattaaatgaGACCGACAgatgcagagagacagacagacagagagattaAGTGAGACAGGCACAGGGTTCAGTTTACATACCAACTTCCACATAGGGACTGAAGGGCACCACGGTGGCCAGCAGCAGTCTGCCCGTCCCAGGCTCCAGCATGCGCCTGATATCCTGCAGCAGGGATAGCGGCTGGTCACAGCGGTCCAGCAGGTTCAGACAGCTGATCACATCATAGCGGATTCCTGCGCTCTGCCACTCATCCACCCCCAGCACCctgcaggagggagggagagagtgatgAAACTAAAATCTAAACATTAGCAGGTCTTTGTGACAATGCTGGCGATTATGCGTACTTCAGTCATGccaaatgtgctttaagtgacaAGCTAAAAATGGTTGTTACAGGGACTTGCGTTGCTCTCCATCCAATTGTCATGCAGGTTCCTCTTAATACCAGCAATATAATTCACTGCAAGGGGAGTGATCAAAATGTGGTTACAAAACCATGTGGGGGGAATAAAAGCTGCAATTATCAttacacacacaagacaaaaaagcatctttaatgttttcaaacaatTATTGTGGACATAGGCACTGTTCAAAACATGTCAGACTTCCATTTCCCTCCGGCAGTACGGCAAGTCCAACTGGACAAAAAAGCTAAGTGCATGTCTATTCAGCCTTACCCTTTTAAATTTGTCACTTAAAGCAGGACTTTTGGGACAACTGACACTGTTATGTAAATGTAGCAATTTGAGAGTTGTATTGATTATTTCACCAGGAGGTTCCGTTCTCATGTAGGATGGGGAAAGAAACTTAAATCCTAATTAAAGGTAGACTATAGGCAGGCCCCATTTTATGTtactttctgttctgtttttggaCTCTGCAGACAACAATCATTACTCATGATCAGAGATTGTTAATGAATAGACAGGAACAACACGGCAAGAGATTAAAAGGGTAGGCCAGATTTTTGTAACCTGTTTGCTGGACTTTGCCCTGACTCCCAGTCAAATACCTCTGCCATTCTGTAATACATATCCTGTGATCTATAATGTCCAACTTTTCAGCTGGAAATTGGCAGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145390 lncRNA upstream 258712 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 387194 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 392318 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 427002 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 428499 9577396 ~ 9577600 (+) True G116027
TU145529 lncRNA downstream 19958 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 31857 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 107582 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 202792 10215387 ~ 10216789 (+) True G116264
TU145625 lncRNA downstream 276399 10288994 ~ 10292221 (+) False AMCG00018422
AMCG00018396 mRNA upstream 37694 9960221 ~ 9968405 (+) True AMCG00018396
AMCG00018397 mRNA upstream 62798 9926956 ~ 9943301 (+) True AMCG00018397
AMCG00018401 mRNA upstream 80153 9899962 ~ 9925946 (+) True AMCG00018401
AMCG00018400 mRNA upstream 110672 9882358 ~ 9895427 (+) True AMCG00018400
AMCG00018398 mRNA upstream 125408 9846901 ~ 9880691 (+) True AMCG00018398
AMCG00018407 mRNA downstream 3351 10015946 ~ 10025490 (+) True AMCG00018407
AMCG00018406 mRNA downstream 31872 10044467 ~ 10046523 (+) True AMCG00018406
AMCG00018415 mRNA downstream 76827 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018412 mRNA downstream 88329 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018413 mRNA downstream 125385 10137980 ~ 10150773 (+) True AMCG00018413
TU145312 other upstream 393181 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 441695 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 764284 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 804513 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1311380 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1953652 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2503208 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3240748 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3295303 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4007333 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile