RNA id: TU145543


Basic Information

Item Value
RNA id TU145543
length 1342
lncRNA type sense_over
GC content 0.54
exon number 2
gene id AMCG00018406
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10044452 ~ 10046523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAACAACTGGGTGTATCTGGGGAATGGGACCAATTTGAGAGCGATCGGAGAAAGCGTCGCTTGAAACAGAAGAGATGTGCGCCTCTGTCGGGACCCCGGCAGTCCTGTCGTAATGCTGTGACTGGAGAAGCGCGGACAGCGGGTCTGTCACAGCGGCGCGTCTCTGCATGGCGGGCCTGTCTCAGCTAGTGTTCAGGTTTTCGGGCTCCGCTGGCAGGACTTATGGGGTGTTTTCTAAAGGGCTGACAAGGACtctgttgatattttttaaCCTGGCCTGGCGGTTGAGAATCCGCTTCCCCTATCTCTACCTCATCGCTTCCATGATGTTCAATGTACGGCTCCAGGTCCACATTGAAATACACTAATGGGTCACACAAGGACCCCTGCATTATCCTTTACATTTGTGACGGTGAAGACCCCCCACCCCGTTTGGCAGACTGACAGAATGTAGCAATTACTTCTGGACACACGGGGAGGATGACGACAGGGGTGACGTCATTGTCTCCTCTCCACCCTTCCGTCGGTGAGCAAATGCAGTGCCTTAAGTTCAGCAAGGCTACGGTGACGTCATGGGCAAAGTGCGACGTCCTGTGGTGGGCGGCTGAGCAGACGAGCCATCCAAAGGGAGACGTGCCTGGGATCTATAGGAAGGGGAGACCTTCGCCAGCCTTTTATTTTCAGGGATAATAAGTTATGTcaatcatgtatttaaaattacagtgaCAGCGTTCAGGGCTTTGGATGTTGGCTACCCAGATATCGAGTTGGAGTGAAATCGGGGAGTGCACACTGACTGCACCCTCCGCACATCCCATCATCTCAAAAGGGAAAACTGGAGTCAATTCCGGACCGCACACCAACCTTTAAGCAAcgggggaggggagggacgcCAACCTGACCGGCTTCCTGTCTGCCGCTGTTCTTTGCTGAGTACCAAGGAGCAGCCGGTGTGATCACGCTGGAGATGGGAGCCGAGGTTTGCGTGGATGAGCTCCCTACACGTCCCACAGCACAGGCTGCAGCCCGCACCGCCCCGCGTCTCCAGCGAGAGATGCCCGTCGGTGTTGGCTGTTCATGGGCGTCGGGAGGTGGGGGTCTGTGGCACACAAACGCACGCCCCTCGGGATTATCCCCGCGTAGCGCTGTACAGAAATAAGAGCTCGTttttgtagcgcagatttccgcagttctgtgcagatctgcagaatcgctccgatcccattggtggaacaGCGCAGATCCGCGAAGAACTGCGGACATCAGCGCTACACCAACGCCACCTAAACACTTTTGATCATtggttttagattttaaatactttataaattgttttttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145529 lncRNA upstream 2619 10032553 ~ 10041833 (+) True G116199
TU145520 lncRNA upstream 31779 10004273 ~ 10012673 (+) False AMCG00018405
TU145390 lncRNA upstream 297065 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 425547 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 430671 9612982 ~ 9613781 (+) True G116034
TU145548 lncRNA downstream 74034 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 169244 10215387 ~ 10216789 (+) True G116264
TU145625 lncRNA downstream 242851 10288994 ~ 10292221 (+) False AMCG00018422
TU145661 lncRNA downstream 298592 10344735 ~ 10345082 (+) True G116300
TU145662 lncRNA downstream 304821 10350964 ~ 10351562 (+) True G116301
AMCG00018407 mRNA upstream 18962 10015946 ~ 10025490 (+) True AMCG00018407
AMCG00018405 mRNA upstream 31857 10006099 ~ 10012595 (+) True AMCG00018405
AMCG00018396 mRNA upstream 76047 9960221 ~ 9968405 (+) True AMCG00018396
AMCG00018397 mRNA upstream 101151 9926956 ~ 9943301 (+) True AMCG00018397
AMCG00018401 mRNA upstream 118506 9899962 ~ 9925946 (+) True AMCG00018401
AMCG00018415 mRNA downstream 43279 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018412 mRNA downstream 54781 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018413 mRNA downstream 91837 10137980 ~ 10150773 (+) True AMCG00018413
AMCG00018414 mRNA downstream 104822 10150965 ~ 10159643 (+) True AMCG00018414
AMCG00018411 mRNA downstream 114321 10160464 ~ 10174296 (+) True AMCG00018411
TU145312 other upstream 431534 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 480048 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 802637 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 842866 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1349733 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1920104 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2469660 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3207200 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3261755 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3973785 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile