RNA id: AMCG00018408


Basic Information

Item Value
RNA id AMCG00018408
length 2168
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00018408
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10004233 ~ 10014893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTAAACGTGGACTGGTATCACCGGTTTTCTGTTGTAATTTCATGCCCAACAActtaatttatgaattaaaaagaGTGCAGTAGCAACATCCTCAGATGAGGCTGGTGCTTTTTGTGGTGTGGATTGCGTTTTACTTCATATCTGTGCTGTTTCTCCGGAGGATGTGGACAGGGAAGTACATGCGGAGTCCCCTGGCCAGAGCCCTGTTTGTGAACATGGTCAGCGAAAGCGCTGGACTGCACGAAACTACCGAGTGGTACCGGGTGTGTCCAGAGCTCCTGGGGGACTCTGTCCGATCCGCCTTCATCCAGAGCCACCTGGACAGTGACACGCAGGCGTTCCTCCGGCACAGCGAGGAGAAGTCCAGCTGGCTGTTCACACAGCTCTATCACTCCTTCATCTCCACTGTCTTCAGCACCTTCCTCTCCCGCACCTCCATCAATGGGTTCCTGGGTCGTGGCTCTATGTTCGTGTTCTCGGTGGAGCAGTTCCGCAGTCTGCTTCAGATCTCCTCTGATTGGAGGCGTCACCGGCTGCTGGACCTGGGGGCCGGGGACGGGGGGGTCACTGAGGTCATGAGCTCCCACTTCCAGGAGGTCTACACCACCGAGGTCTCCACCCCTATGAAGTGGCAGCTCCAGAGGAAACAGTTCAAGGTGCTGGGGGTGGATGAGTGGCAGAGCGCAGGAATCCGCTATGATGTGATCAGCTGTCTGAACCTGCTGGACCGCTGTGACCAGCCGCTATCCCTGCTGCAGGATATCAGGCGCATGCTGGAGCCTGGGACGGGCAGACTGCTGCTGGCCACCGTGGTGCCCTTCAGTCCCTATGTGGAAGTTGGTGGAAAGTGGGAGCGGCCTACAGAATACTTGAAGATTCAGGGAAAGACATGGGAGGAGCAAGTGACAAGCTTGGCCAATGAGGTGTTCCTGGAGGCGGGGTTTGCGGTGGAGGCAGTCACCAGGCTGCCCTATCTGTGCGAGGGGGACATGTACAATGACTACTACATGTTGGATGATGCTGTGTTTGTACTTCGACCTCTGGAGTGACTGCAGTAACCCCTCTCAGGGCCGCACTGCACCCCAGGCACTGCCACGCACAGATACTGGTACCACATCAGATCAGCCGTCTGCCCTTAGGATTCATACCTTGGACAGCAAGTGCATCTTGAAAATAAGtcaatttcatttacatttcatttttttattttggtatctGAAAAGCACAGTGACACTTCCACTGCTCACTCAAACCCGGTTGTGTTTTCAGTGGtgaacttgtgtgtgtgttcttcttCTGCACTTCGGTTAAATGGTGGTGTTTTTAATCTGGATTAATTTTGCTGGAGATCATGGTTTCCCACAAAGACGATCTGCATAATGCACTGTTGCTGTGAGATTGTGCTGATACCTCGGGGTAGGGTTACAGATCATGAAAAGTGTGTTTAGGAAATCATTCATAACACGACAGTGACAATGGAGAGTAATGCTGCCTCTCCTTTGAACATTATCTTTACCACGGTCGTCTGCCGGTAGATCAAGACATTGAATAACATATTTCACAGTCATTGGGAATAAAATACTGCTGAAGTGATCTGATCAAGGGTCCCAGCCTGCAATACATTCCAGCCAAAGGCTTTATGAAGAGCAACCAGAACCATCaactgattttttgttttttttcgaTTACTTTATAGTAAATAAAGACATCTTAAAATCCTTCCCGTCCAAGCACTGTAGGCAATGCAATACAACTAATCCAATATCCTAATTAAGTGAATAGacacacattttctaaatttttattttattttttcctggtaacatttattttcctctcgGGAGCTCCAAGGTGCATTTAATAAGCAATATTTTGTGTTCATGTACAGTGGTGTTGGTTAAGTCCTCATAAACCCATCTCCTTCAGGGAAAGAGAGATAGAGGAGCTGAAACAATAGCTGTGCTTAGGAGAAGAGGAGGTATAGAGACTCACCGAGCCACTGGCCATATGCgttcacatttcttttcatgtaaaattaattattattataattttttctttatatctcAGGAaattttcaattcaaaatgtcCTTTTTTCAATCAATGGAAGGGCAGTACCGGCAgttaaaatctgattaaataaaaaacatttctttctgTAACAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145444 lncRNA downstream 215654 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 226884 9774306 ~ 9777349 (-) True AMCG00018390
TU145352 lncRNA downstream 476497 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 522081 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 788416 9200800 ~ 9215817 (-) True G115949
TU145572 lncRNA upstream 128532 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 148385 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 154355 10169248 ~ 10169622 (-) True G116256
TU145719 lncRNA upstream 594125 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 723658 10738551 ~ 10739008 (-) True G116355
AMCG00018409 mRNA downstream 2083 9986174 ~ 10002150 (-) True AMCG00018409
AMCG00018404 mRNA downstream 23237 9973285 ~ 9980996 (-) True AMCG00018404
AMCG00018403 mRNA downstream 44173 9944688 ~ 9960060 (-) True AMCG00018403
AMCG00018390 mRNA downstream 224688 9776179 ~ 9779545 (-) False AMCG00018390
AMCG00018394 mRNA downstream 237385 9761500 ~ 9766848 (-) True AMCG00018394
AMCG00018410 mRNA upstream 14609 10029502 ~ 10041516 (-) True AMCG00018410
AMCG00018416 mRNA upstream 105706 10120599 ~ 10134619 (-) True AMCG00018416
AMCG00018417 mRNA upstream 132639 10147532 ~ 10150509 (-) True AMCG00018417
AMCG00018418 mRNA upstream 159527 10174420 ~ 10189358 (-) True AMCG00018418
AMCG00018421 mRNA upstream 181316 10196209 ~ 10198405 (-) True AMCG00018421
TU145480 other downstream 79651 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 746031 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 2230341 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3360961 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 3380620 6618475 ~ 6623613 (-) False AMCG00018291
TU145571 other upstream 114667 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 292697 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 320308 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 345236 10360129 ~ 10385216 (-) True G116307
TU145708 other upstream 550902 10565795 ~ 10572002 (-) False AMCG00018431

Expression Profile