RNA id: AMCG00018409


Basic Information

Item Value
RNA id AMCG00018409
length 3366
RNA type mRNA
GC content 0.59
exon number 24
gene id AMCG00018409
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9986174 ~ 10002150 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGGACACTGTCTCtgtgcctgctgctgctgctcctggcACACCTGCCCACCACGGGACCACAACAGCCGCAGCTCGCCCTGGTGGACGCATTCCTGTTCGCAAGTAAACAGCAGCCCTGGAGCCCCCTGGACGCCCTGAGGTATCTGCTCCTCAGAAACAGTTCCCTGAACATGGAGAAGATAACCACCATCCTGAGGGACTATCAGAACGGCCTGATCCAGGAGCCCCAGCAGCTGGTCTCTGACCTCAGCAGCCTGGACACACTGCAGTTCATCACCGCACTGAGACTTCTCTTCCAGGGCCGGAAAGAGCAGACGGCTCTGATCGATGTGGACTTCGATGCGATGAAGGTGGCGCTGGAGCGCAGCCCTGGGGGGAACCGCTCTCTGTTCACAGCGGCCAGGGAGCGCTGTGTACCGGCCCTGCGCAAGGGTGGCTGTGTGGAGCTCATGTCCGCTCTGCTGAGCCTGTCCGGCGGGGAGTTTGTCCGGGAGGACTTCATCATGGAACTGCCCTCTGACCTGCCCGACAACACCTTCAGAAACCTAACAGCCGTGTTTAAGGACCTGTACGACATGTTCTCTTCAGCCACCCAGAGGGCCGTTTACAAGTGGATCATCCAGGGGCTGCAGAAGACCTCTAAATCCCACCAGGGGTCAGAAGTCTGGGTCACTGCTGAGAATCTGTGGTTCCTGGGCCGCTACATTGTTCATCTGGGCATCCACAACATCCACCGCATCAGTCTGAGTGAGATGCGGTTGTTCATTAACTATGACAACGCCACCAAGCAGCTGGACTCCGTGTGCGACATCAAGCATGCCACCGCAAAGGCCTTCCTGCGCCGTGTCAATGCGTCTGGCTTCGACATGGCCAACGTCTCCATCGCATACAGGTCAGTACCCCCTAGTATTCCACAATACCCTATTGCACCTCCTagcaccctgacacacacacaaacacacatatcaGACTGCTCCCTGGCCACCATCACACTCCCTAGCATCTTGAACACGACAGGTGAGAAAGCTTTCAGCAGCTATTGTGTAACCCCTCTGGACGTGGCCGATGCCCGCAGCCTGCTCCACCAGCTCATCAAGTGCAACCAGCTGCGCGGGAGCCAGGCAGATGTCCAGAAGCTGAAGTCTCAGCTACTGGCCGTGGTGATGAGGAACCAGACGCTGAATGAGTCTCTGGGGTCAGTGTCAGATGCTGTGGTGGGCCTGACCCCTGGCCAGCTGGAGGCGCTGTCTGCTCAGGCAGTGCAGAGCTCTATCGCGGTGCTGCAGCAGGTCTCTGGATGGACCCGCAGTCAGACCATCATACTGGTTCACAAATACATCGGCACCAGCAAGttCCTCTCCTTCAGAAACATCACTCAGCTGGGTTCCCTTATCTCGGGGGTGGATGCCAACCTGTTTTACAGTGTGAGTACGGAGGAGTTGTCACAGGCGCTGGAGAGCACGCTGTCCCAATATGCCGCCCACCTCAACCCTGCACAGCAACACGCCATTGTCGGTCAGATGCTCACGGCCTCGGACGTGGAGTCAGTTCTGCGGCAGATCCCGGGCGTGCTGTTCGCAGAGGTGTCGCTGTCCACCCTGCTGAGGCTGCGGAGCCTGGACACCGAGGCATTTGAGGAGAAACAGCTGACCCGCAGCCAGGTGCAGCACccccacactctcacactCACCGGGCAGCTTCTCAAGGGCATACCCTGCAAGGAGATCCAGAGGATGAGCAGCGTCTCCTTCATCGCCAACTTTTCCCTCTTTGAGAGAAGCTTCCATCTGCTCTCGCCCCTCCAGCTGTGTAGAGTGGTCAGTGGATGCGTTGTTGACCTGGTGACTGTGCTCTGCAGTGTGGAGTATGTGGACAAcatgccctccacctcctgtaAAAGCTTCTTGGTGGCTCTGGGCCGTGTGGACCTGGACCTCCTGACGGTTTACGCAGAGAAACGGGAGGCCGTCGTCAAGAAGGTGCTGCAGTGCCTGagagagggggtgagagATGAGTACGATGTGGACACCCTTGGCCGACTCCTGTGCCACCTGCCCCCCGACACCATCCGGGCCCACATCGCTGCCCCCGCCCTATCTGCCGCACTGCGCCAGTTCCGGAGCTGCCCACGGCTCAGCCAGGAACAGAAAGATGCCATCAAGAGCAAACTGGCACAGCTGTACGGGAGCCCTTGGGAGTGGAGTGCGGAGCTGACTCAAGACCTGGGCCTCCTGGTCACCCTACTGTCCAGGGAGGAGATCACAGCCATCGCTAATAAGTACCCAGAGGAGGTGTGGCCCCTGGCAGTGCCCGTTTCGGGGGGCTCTGTGCCTGAGGAGTTCCTGGCTGCGCTGTTTGATGCAGTGCATGGCACAGAGGCCAGAGATGGCATCAGTGCCCAGCCTGGGACAGAATGTGATGCAGTCAGAGCGCCATCTGCTGACGACATCCGTAAGTTGTTGGAGGCCAACGTGTACTGGACTGACCTGGAGTTGCAGTGCATGAGCGATGATACCTTCAAACAGACTGTGGAGCTGCTGGGCTCTGTCGGCAGATACAACACGTCCCAGCTCCACACGCTCAAAACACGCGCCAGACAAGCGTGGGGCCCCCTGTCAACCTGGAAGAGCTACCATGTGATCTCTCTGGGGACAATCGCGCTGGCCCTCACAGAGGAGGACATCATGGAGCTGGACCTGAGCTCCATTGACACACTGACCGCCCTCAGCCAGCAACACACCTGGACCCCTCAGCAGATGAGCAGCCTGTTGTCTCGGTTCCTGGAGGCATCAGGTCTCAGCCTGGGGGCCCTGCGGGGGTCAGACCTGGCTGGGCTGGGGGTCATCCTGTGTGGGGTGGAGCCCAGCCAGGTGTCCCTCATAAGCCCTGAGGCCTACAGTGTCACTGCAGCCCGAATCGGCACCCTGCCCTGCACCCTGCCTGTGCTGCGCGAGCTGAAGAGGATAGCAGAGAGGGTGTTCGGGGAGGCTGGCACCTGGAACAGCTCCGTTCTGCAGGAGGAGCTGAGGAACCTGGGCACTGAGCTGATGCCATACCTGCAGCCTCAGGCCATTTCTGCCATCCCTCCGGATCTCTTCAGGGAGTTCTCCCGTGAGCAGCTGCAGAGCCTGGGCCCAGAGAACGTGGCAGCGGTGACATCATCACAGTGTGCCCAGCTGAGTCAGGAGCAGATGCAGGGCCTACAGGCGGCACGTGATGGCCTACGAGAGAGGCCTGCCAGTGCTGCGGCCACTGTCAACCAGGGTGCCAGCCCCATTAGCTCCAGTAAGAAAAGACTCTGCCACACACCTTCTGCACATTGGGTATCACACAATGACATAGAACTATCAGTCATCTAA

Function

GO: NA

KEGG:

id description
K25029 OTOA; otoancorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145444 lncRNA downstream 197595 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 208825 9774306 ~ 9777349 (-) True AMCG00018390
TU145352 lncRNA downstream 458438 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 504022 9480910 ~ 9482152 (-) True G116058
TU145202 lncRNA downstream 770357 9200800 ~ 9215817 (-) True G115949
TU145572 lncRNA upstream 141275 10143425 ~ 10144599 (-) True G116236
TU145598 lncRNA upstream 161128 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 167098 10169248 ~ 10169622 (-) True G116256
TU145719 lncRNA upstream 606868 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 736401 10738551 ~ 10739008 (-) True G116355
AMCG00018404 mRNA downstream 5178 9973285 ~ 9980996 (-) True AMCG00018404
AMCG00018403 mRNA downstream 26114 9944688 ~ 9960060 (-) True AMCG00018403
AMCG00018390 mRNA downstream 206629 9776179 ~ 9779545 (-) False AMCG00018390
AMCG00018394 mRNA downstream 219326 9761500 ~ 9766848 (-) True AMCG00018394
AMCG00018392 mRNA downstream 232022 9744999 ~ 9754152 (-) True AMCG00018392
AMCG00018408 mRNA upstream 2083 10004233 ~ 10014893 (-) True AMCG00018408
AMCG00018410 mRNA upstream 27352 10029502 ~ 10041516 (-) True AMCG00018410
AMCG00018416 mRNA upstream 118449 10120599 ~ 10134619 (-) True AMCG00018416
AMCG00018417 mRNA upstream 145382 10147532 ~ 10150509 (-) True AMCG00018417
AMCG00018418 mRNA upstream 172270 10174420 ~ 10189358 (-) True AMCG00018418
TU145480 other downstream 61592 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 727972 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 2212282 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3342902 6638342 ~ 6643272 (-) False AMCG00018291
TU144568 other downstream 3362561 6618475 ~ 6623613 (-) False AMCG00018291
TU145571 other upstream 127410 10129560 ~ 10136769 (-) False AMCG00018416
TU145658 other upstream 305440 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 333051 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 357979 10360129 ~ 10385216 (-) True G116307
TU145708 other upstream 563645 10565795 ~ 10572002 (-) False AMCG00018431

Expression Profile