RNA id: AMCG00018411


Basic Information

Item Value
RNA id AMCG00018411
length 2610
RNA type mRNA
GC content 0.55
exon number 20
gene id AMCG00018411
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10160464 ~ 10174296 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAagggagaaaagaagaaaaaagtggaTAAGTCGCCACTCGAGGTGTCCTTCCAGAAATTAACGCAGAGCAGCTCCACCGTGGGGTCCGAGCTGCCGGCCGACACCGAGGAGGACTCGGCTCTGACCTCGGCGCCCAGCCAGTCGCCCGTGGAGTCGCCAGCCCCGGCCCCCTGTCCAGACCCGCAGCCCCCGGCACCGGAGATCTTCCAAGAGCCGGTTCTTACTCGCATAATAGTAGAGAGGTTTTACGAAGGAGAAACTTTTCACGGACTCTATCACGGTGAAGGAATTGCATATTTTCAGGGAGGTCATGTTTACCAGgGTATGTTTTCAGAAGGACTGATGCATGGACAAGGGACCTACATGTGGGCTGATGGGGTTAAATATGAgGGGGATTTTTCAGTGAACGTGCCCATGGGTCACGGCGTGTACACATGGCCCGACTGCAGTTCCTATCAGGGCGAGGTGTACGAGGGACTACGCCATGGAACTGGCACGTACAGATGTGGCAACAAGTCCGCCTCCTACACCGGGCAGTGGCATCAGGGGTACCGACATGGAAAGGGAATAATGTACTATAACCAGGAAGGAACATCGTGGTATGAGGGAGACTGGATCTGCAACGTCAGGGAGGGGTGGGGAGTGAGATGCTTCAGCTCTGGAAACCTGTATGTAGGCCAGTGGAAGAACGGCGCAAGGCACGGAGAGGGCAGGATGCAATGGCTGTCCTACCGGCAGCAGTACAATGGGCAGTGGGAGAATGGGATCCAGTACCCCCTGCGGAACGAGTACGTGGGGGCGTTTGTGCAGGGTCTGCGCCACGGTCACGGCAAGTTCTACTACGCCAGCGGAGCCCTGTATGACGGCGAGTGGCAGTGCAATAAGAAGCATGGTCAGGGAAAGTTTATCTTTAAGAATGGACGCATATTTGAAGGCGAGTTTGTAGAAGATCACATGGCTGAGTTTCCAGGATTCTCATTGGATGGAACTCACAGTCCAGACCTCAGTGGCATCAGGACTCACACTCCCCCTTGTGGCGATGATGAAACTTCAATTAGATCCCAAGCACCAGGCTCCTTGGTGCTGGGTCCTGACATGGCTTTAGATATCTGCAGCCTGCTGGAGAGACTTCCTGAAGCCAGCAGAGACACCGAACTGAAGCAGGTGGAGTTTGCTGTTCTAAGGCACATCACAGAGCTGAGGCAGGTGTACAGCTTCTACAGCAGCCTGGGCTACGAGCACTCCCCAGACAACACCTTCCTGCTCACCAGGCTGCAGTTCTGGAGGCTGCTGAAGGACTGCCAAATCCACCAGCACCACCTCACACTGGCCCACGTGGATCGGCTTTGTAaaggTGTTCCTCCTGACGAGATTCATTCCCCATTTGATACCATGCTTCTCAGGACGTTCCTCAGTAACATGATTGTGCTGGCTTACGATATATATCATGAACAGATTGAATCATCAAATCACATTTTAGCATCCTGTTTTTATAAGCTGGTAAGAGAGAACATAATTCCAAATGCAAGGGATGTGAAAGGTACATTCTTCAGCCACCACCTCCATGCTGTCATAGCTGTGAACTACATTGAGAAGAGCTGGGAGATATACAGGGCCTACTGCTTGCAGAACATGAGGGCACCATATGAGCCCTCAATGAAAATGAGACACTTTATACAGATGTTAAAGGATCTTAATCTCTACGGGGAGGAGCTGACAGTTGGGAAGGCCCTGCACAAACTTGCTGCTGAGAACCCTGCCGCCTATGATGGGACCCACAGTAACCTGGAGCTGGAGATGACGTTCCTGGAGTTCTTCGAGGCATTGCTGGGGTGTGCAGAGGTGTGCGGCACAGGGCCAGGCCCCTCGGAGATCCCTGCAGATGTGTGGAAGGCGGAAGACGTGCCCAGAGACTCCCCCGTGGAGGAGCAGAGAGGCAGCCCCTCTcagcacacactgcagccctcTTCACAGACCAGTGCGTTTGTGAACCTGGCAGTGGTCGATCGatgtgcGCGCAGTGGCTCGGCTCTCCAGTCGGCACGCTCGCAGTCTGTGGAAGGTGTGCACAGTGTCTCAGACCTCAGTGTGAGGATGCTGCACTCAATGCCAGCCCTGGCCCCCGCGTGTGTCAGTCCTGGCTCAGACAGAGCTGAAGGTCTCGATGAACGGGAGAGTGAACTGGACCGCTGGATACAACAGGTGCATGTGTTCTTCACCAAGAGGTTCTTCCCAGCGTACGAGTACAGCCTGCTGGTGAAGAAGGAGGTGGCAGAGGAGCGTGAGCGGAGGGTGGTGCGGGCCCGGACAGCCAGAGCCAGGGCAGCGGAGGCAGCCAGCCAGTTTCCAAACTATGAGGAAAAGCAGGACGATTTCAGGAGCTCACCATCCTACTCGGAGGTGGCTATATCGTCAGGACTGAAGAAGCTGTGGGAAGCAGCAGAGGAGAAACAGCgtgaggaacaggaggagcaggAAGGGGAGAGAGTGGAGGCTCAGGAGGAAGACCCTTACCCTCTCCGGTCTCCCGTCCTCACAGTCAGCACCTCGGCCGTCAGGATCACCAAGCCCCCCCCTTCCAGcgggaagaaaaagaagaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145548 lncRNA upstream 38906 10120177 ~ 10121558 (+) True G116214
TU145543 lncRNA upstream 114321 10044452 ~ 10046143 (+) False AMCG00018406
TU145529 lncRNA upstream 118631 10032553 ~ 10041833 (+) True G116199
TU145520 lncRNA upstream 147791 10004273 ~ 10012673 (+) False AMCG00018405
TU145390 lncRNA upstream 413077 9689765 ~ 9747387 (+) True G116088
TU145613 lncRNA downstream 41091 10215387 ~ 10216789 (+) True G116264
TU145625 lncRNA downstream 114698 10288994 ~ 10292221 (+) False AMCG00018422
TU145661 lncRNA downstream 170439 10344735 ~ 10345082 (+) True G116300
TU145662 lncRNA downstream 176668 10350964 ~ 10351562 (+) True G116301
TU145663 lncRNA downstream 181676 10355972 ~ 10357357 (+) True G116302
AMCG00018414 mRNA upstream 821 10150965 ~ 10159643 (+) True AMCG00018414
AMCG00018413 mRNA upstream 9691 10137980 ~ 10150773 (+) True AMCG00018413
AMCG00018412 mRNA upstream 40410 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018415 mRNA upstream 65820 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018406 mRNA upstream 113941 10044467 ~ 10046523 (+) True AMCG00018406
AMCG00018422 mRNA downstream 83509 10257805 ~ 10292261 (+) True AMCG00018422
AMCG00018425 mRNA downstream 124707 10299003 ~ 10299554 (+) True AMCG00018425
AMCG00018423 mRNA downstream 159225 10333521 ~ 10342424 (+) True AMCG00018423
AMCG00018426 mRNA downstream 257894 10432190 ~ 10440657 (+) True AMCG00018426
AMCG00018429 mRNA downstream 322577 10496873 ~ 10562962 (+) True AMCG00018429
TU145312 other upstream 547546 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 596060 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 918649 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 958878 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1465745 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1791951 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2341507 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3079047 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3133602 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3845632 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile