RNA id: AMCG00018417


Basic Information

Item Value
RNA id AMCG00018417
length 879
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00018417
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10147532 ~ 10150509 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCAGGTAGACCCGGCGGTCAGGGCGCTGGAGGCTCGGCAGGATGAGATCTTGAGGCGGCTGTATGAGCTGAAAGCCACTGTGGACGGCCTGACCAAGACCATCACCACCCCCGACGCTGACATCGACGTGGCCAGCCTGTCTCAGGGAATGGGCAGTGCAGTGTTCACTGGCCCTGCTGATCTGGACTCACTGCTGGGGAAGGCAAGTTTCACTGGAATTATCATGCTTCTGCTTTGGAGAAGGGATTATGGAGCTCTGAGGGACATTGTGGTGAACGCCGACCCTGCGCAGCCACCCCTCTCGCTGCTGGTGCTACACAGCCTGCTGTGTCAGCGCTACAAGGTGCTGTCAGCCGTCCACGTGCACTCTTCCGTCACTGCCATCCCGCCGCAGCTCCTCGCCTGCCTTGGACCGCGCAATACCCTCAACCACTCCCGCCACGACTTCCAGCTCGGCTTCACACTCATATGGAAAGATGTGCCTGCGCCACAGATGAAGTTCAGTGTGCAGAACATGTGCCCCATCGAAGGGGAGGGCAACATCGCCCGCTTCCTGTACAGGCTGCTGAGCCCTGGACCCCAGGATGCTGTGAGTGCCACATTGATGGACAGCTGGGTAGACACGGCCATCTTCCAGCTGGCAGAGGGCAGCAGTAAAGAGAAGGCCGCCGCTCTGCGGGCGCTGAACGGGGCTTTGGGCCGGGTGGCGTGGCTGGTGGGCTCCGATCTCTCGCTGGCTGACATCGTGTGCTACTGTGCCCTGCTGCGGTCAGGCAGCAATACCTCTGCCCCCGCCAACGTTCAGAAATGGATGAAATCGTGTGAGAATTTGTCCCACTTCAACTGTGCCTACCAGGTTCTACAGTCAAAGTGA

Function

GO: NA

KEGG:

id description
K15438 AIMP2; aminoacyl tRNA synthase complex-interacting multifunctional protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145572 lncRNA downstream 2933 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 358953 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 370183 9774306 ~ 9777349 (-) True AMCG00018390
TU145352 lncRNA downstream 619796 9527492 ~ 9527736 (-) True G116065
TU145342 lncRNA downstream 665380 9480910 ~ 9482152 (-) True G116058
TU145598 lncRNA upstream 12769 10163278 ~ 10163522 (-) True G116255
TU145599 lncRNA upstream 18739 10169248 ~ 10169622 (-) True G116256
TU145719 lncRNA upstream 458509 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 588042 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 820371 10970880 ~ 10971087 (-) True G116365
AMCG00018416 mRNA downstream 12913 10120599 ~ 10134619 (-) True AMCG00018416
AMCG00018410 mRNA downstream 106016 10029502 ~ 10041516 (-) True AMCG00018410
AMCG00018408 mRNA downstream 132639 10004233 ~ 10014893 (-) True AMCG00018408
AMCG00018409 mRNA downstream 145382 9986174 ~ 10002150 (-) True AMCG00018409
AMCG00018404 mRNA downstream 166536 9973285 ~ 9980996 (-) True AMCG00018404
AMCG00018418 mRNA upstream 23911 10174420 ~ 10189358 (-) True AMCG00018418
AMCG00018421 mRNA upstream 45700 10196209 ~ 10198405 (-) True AMCG00018421
AMCG00018419 mRNA upstream 52270 10202779 ~ 10218488 (-) True AMCG00018419
AMCG00018420 mRNA upstream 73163 10223672 ~ 10231201 (-) True AMCG00018420
AMCG00018424 mRNA upstream 152545 10303054 ~ 10332982 (-) True AMCG00018424
TU145571 other downstream 10763 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 222950 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 889330 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 2373640 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3504260 6638342 ~ 6643272 (-) False AMCG00018291
TU145658 other upstream 157081 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 184692 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 209620 10360129 ~ 10385216 (-) True G116307
TU145708 other upstream 415286 10565795 ~ 10572002 (-) False AMCG00018431
TU145777 other upstream 911146 11061655 ~ 11068318 (-) False AMCG00018437

Expression Profile