RNA id: AMCG00018420


Basic Information

Item Value
RNA id AMCG00018420
length 594
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00018420
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10223672 ~ 10231201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATGGCTGACCTGTTCTCTTTAGCGGATATCCACACTGCCATCAGCTTATGCCAAGCCGACTCCTTCAACCACAAAGCTTTCTTCGCTGCTGTCGGTCTGTCCAGGAAGTCCCAGGACGAGGTTAAGAAGGTCTTTAAGATCCTAGACCAGAACAACAGCGGCTTCATCGAGGAAGAGGAGCTACAaactgTCAAGAAGACCATGGCTTTAGCCGGCCAGCTGAGAGAAGAGGACATCACCACTGCTCTTCAGAGCTGCCAAGGTAAGCAAGATGGGAGCGAGGGAGCTCCCCGCCACAGCCTCACACACGCCCCAGGAGGAGctGCTGGCTCCTTCAATCACAAGACATTCTTCGCCCAGGTCGGACTCGCCAACAAATCTGCCGCCTACGCAGAGAAAGTGTTCCAAATCCTGGACCAGGACCGGACCGGATTCATTGAGGAGGATGAGCTGAAAACATTTCTGCAGAACTTCTCTGCCGGCGCCAGAGTTCTGACTGATGCCGAGACCAAGGCCTTCCTCGCCGCTGCTGACTCTGATGGCGACGGCAAGATTGGAGCTGATGGTAAAAAGAAAGAAGCCCATTAA

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145599 lncRNA downstream 54050 10169248 ~ 10169622 (-) True G116256
TU145598 lncRNA downstream 60150 10163278 ~ 10163522 (-) True G116255
TU145572 lncRNA downstream 79073 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 435093 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 446323 9774306 ~ 9777349 (-) True AMCG00018390
TU145719 lncRNA upstream 377817 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 507350 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 739679 10970880 ~ 10971087 (-) True G116365
TU145736 lncRNA upstream 741894 10973095 ~ 10973307 (-) True G116367
TU145737 lncRNA upstream 746021 10977222 ~ 10979678 (-) True G116368
AMCG00018419 mRNA downstream 5184 10202779 ~ 10218488 (-) True AMCG00018419
AMCG00018421 mRNA downstream 25267 10196209 ~ 10198405 (-) True AMCG00018421
AMCG00018418 mRNA downstream 34314 10174420 ~ 10189358 (-) True AMCG00018418
AMCG00018417 mRNA downstream 73163 10147532 ~ 10150509 (-) True AMCG00018417
AMCG00018416 mRNA downstream 89053 10120599 ~ 10134619 (-) True AMCG00018416
AMCG00018424 mRNA upstream 71853 10303054 ~ 10332982 (-) True AMCG00018424
AMCG00018427 mRNA upstream 110941 10342142 ~ 10366255 (-) True AMCG00018427
AMCG00018428 mRNA upstream 146092 10377293 ~ 10384857 (-) True AMCG00018428
AMCG00018430 mRNA upstream 253972 10485173 ~ 10492963 (-) True AMCG00018430
AMCG00018431 mRNA upstream 331353 10562554 ~ 10580105 (-) True AMCG00018431
TU145571 other downstream 86903 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 299090 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 965470 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 2449780 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3580400 6638342 ~ 6643272 (-) False AMCG00018291
TU145658 other upstream 76389 10307590 ~ 10309195 (-) False AMCG00018424
TU145667 other upstream 104000 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 128928 10360129 ~ 10385216 (-) True G116307
TU145708 other upstream 334594 10565795 ~ 10572002 (-) False AMCG00018431
TU145777 other upstream 830454 11061655 ~ 11068318 (-) False AMCG00018437

Expression Profile