RNA id: AMCG00018424


Basic Information

Item Value
RNA id AMCG00018424
length 5970
RNA type mRNA
GC content 0.51
exon number 22
gene id AMCG00018424
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10303054 ~ 10332982 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacaaaggGAATGGGACACAGTGTTAATCTGACGGCGGTTCTCTGCAAAACAGTGACACCCTGGCTGACCAATCAGAAGCGGAATGTCAGCCGAGCATGGCGCGAAGTGGCCAATCAGAGTGGAGGGCCAATGACTTCCGGGTCTGCCATGCCAGTCAGCCTGCTGTGGGCAGTGGATGTGTACGGGCGTGTGTACAGTCTGTCCACTGCTGGCCAGTACTGGGAGCTGTGTAAGGATGCCCACCTGGAGTTCAAGCGCGTGACAGCAGTGGAGCAGTGCTGCTGGGGCATCGCCTGTGACCATCAGATCTACCTATATGTGCACTCCAGCGACGTGCCCATCCGCTACCAGGAGGAGACCTATGAGAATCAGAGGTGGAACCCTGTGGATGGGTTCTGCGAGAGGCTGTTGCCAAGCGACCGTTGGCAGTGGAGTGATGTCACCGGTCTGAAACACCAGCCTTTGGATGGGTTTGAGCTGTCCTCTGAGCACTGGGAGTGGGAGGCTGACTGGCGATGGATCCGATACAGGAGGTATAAATCCCGGGACTCCTGGGCCAAGATACCCTCAGGGGAGACGGGGCCGCTGCCAGACCCCTTCAATGACATCAGCTGTGGTGGCTGGGAGATTAGCGAGGATCCGCGCAGCCGACTCTCTCTGTGGGCCGTGTCGCTGCAAGGCAAGGTGTGGTTCAGGGACGGCATCTGCCACCACAATCCGGAGGGCACCAGCTGGGAGGAGGTCATGACCCCGGGGGAAGTGGTCCAGATCAGCTGTGGGCCGGGGGATCTGGTCTGGGCTGTGCTGTGGGAGGGGCAGTTACTGGTCAGAGAGGGCATCGGACGGGACAACCCCAAAGGCTCCTCTTGGGTGGTGGTGGACGCCCCAAGCCCAGAGGTGGGGGCCATTCATGTAGCAGTGGGTGTCAACGTGGTGTGGGCCGTCAGCAAGGACCGCAAAGTGTGGTTCAGGCGGGGCGTGAACTCCCACAATCCCTGTGGCTCGGGCTGGATCGGCATGGTGGGCGAGATGGTGATGGTGAATGTGGGGCTCAATGACCAGGTGTGGGCTGTGAGCTGTGAGGACCGCGCCGTGTGTTTCCGGCAGGGCGTGACGGCCAGCGAGCTCAGTGGGAAGGCCTGGAAGCCGGTGTCTGTGCCCCGGGATGGAGACCGCTCCCACTCCGGCAGCGCCAGCAGCCTGGCCAGTGCCGGCTGTTTCTTTGGGGGCGAGGTCCGGGTGCAGTCCCAGGGCTCGGTGATGAGCGACACCGAGTCCTCCTCAGACACGGAGCGGTCAGCCCAGGCAGTGCAACCAGCGGCCCAGCCCCCCCCCTCGGAGCAGGGTGAGACCCCCCACGCCCACATCCCCAAGGTGACCAGCGACAGCTTCATCTCAGAGCTGGTCTCTGACAAGGACAGCCCTCTGGGACCAGGTGGGGCGGGCCCGACCATTGTAGAAGAGAGACCGGGAGCAGGCGGCAGCCCCCCCGACAAGGAAGGCCAACTCCAGACCCTGGTGCTCTCCCCCAGCAAGGAGGGCAGCCGAGACCCCCAGTGGAGCAACGTGGACCTTGAGGAAGCGCAGACACACCTGGCCGTCGCCTCGGCCACAGACCCGGCAGAGACCTCCAGTCTGTCCTCCATCGCCACCTACAATTTTGGCCTGGAGGGGCCCTACGGGGCAGACGAGCATCCTCTGTGGGCCTGGGTGAGCGGCGGGGGGTGTGCTGTGGACTCCCATTCGCAACTCAACTGGTTCAATTCCACCACAGTCCTGGTCAGTGTATTAAAGGCTTTGTTCTTTGCTGCCCCCCCCGCCTGCCCCTCTGAACAGTCTGTGTGGGTGAAGAAGGGGAACATGCAGTGGTGGAGGGACTGGAAGCCCCACAAATGGATCGACGTGCGCTTTGCCCTGGAGCAATTTTCCGGCACCGAGGGCAACAAAGATGGCATTCTGTTCATCTACTACACCTTCAACGACGAGAAGAAGCTGGCCTTACTGAGCGTGTCCTGCTGTGACTCCCGGAGGATCCAGGGCCCCCCCTCCAAACAGGCAATCTGGTCCACCACCTGCATGGGAGATGTCTTTGTCAGCGAGCCCCTGCCCAGCCTGGAGGCCTCGCCCTACCCCATGCCCTGCGATCAGATGTTTTGGAGGCAGATCGGAGGGCACCTGCGCTTAGTGGAGTGTAACAGCCTGGGCGTCGTGTGGGGCATCGGGTTCGACCACACGGCCTGGGTGTATACAGGCGGCTATGGGGGAGGTTTCTTCCAGGGGCTGGCCAGCAGCACGGACAATATCCATACCCAGACTGATGTCAAGAGTGTGTACATCTATGAAAATCAGCGCTGGAATCCTGTAACTGGCTACAGCAACAGGGGCCTGCCCACCGACCGGTACATGTGGAGCGATGCATCGGGCTTGCAGGAGTGCACCAAAACCAACACCAAGCCTCCTTCCCCTCAATGGACCTGGGTGTCCGAGTGGACAGTGGACTACAGTGTGTCTGGCGGCACGGACAGAGAGGGCTGGCAGTATGCTGCAGATTTTCCAGcGAAGTGTAAGATCACAACGACAGGCCCATGGAAGGAGGTCATGCCCATCACACTGCTAGATGTCACCATCCTGCCCTGCTCGGCCCACAGCAGCCTGGATCAGGTGTCCCTCTGGGCCATCAGCAGCAAGGGCGATGTCCTGTGTCGTCTCGGCGTCACCCCTCAGAGCCCAGCGGGGACTTCCTGGCTCCACGTAGGGACAGACCAGCCTTTTAAATCCATCTCCATTGGCGGTGGCTACCAGGTGTGGGCCATCGCCAGGGATGGCTCTGCTTTCTACCGGGGCTCAGTCTCTGCCCAGAACCCTGCAGGAGACTGCTGGTACCACATCCCCTCCCCGCCCCGGCAGAAGCTGAAGCAGGTGTCGGTGGGGCGCACGTCAGTGTACACTGTGGACGAGAATGGTAACCTCTGGTACAGGCATGGACTCACCCCCAGCTATCCCCAGGGCTCCTCCTGGGAGCACATCTCCAACAACGTGCGCAAGGTCTCCGTGGGCCCCCTGGACCAGGTCTGGGTCATCGCAGACAAAGTCCAGGGCAGTCACAGTCTGAGCTGCGGCACTGTCTGTCACCGCGTCGGTGTGCAGCCCATGGAGCCCAAGGGACAGTCCTGGGACTATGGAATAGGAGGCGGCTGGGACTACATCTCCATAAGGGCCAACTCCCAGGAAGCTCCCAGGATTGTGATCCCCTCAGCAGGGGAGAACTCTGCAGGCAGGCCCAGCGCGCCCCCTCCGCCAGTCAGCAGCAGGAGCCCGCTGCTCCTCAGAGACCAAGAGGAGATGAACGGAAACGCAGTGAGCTGTTGAGAACCCACACTGTCTCTAGTCCTATAGTAatgtcccccctcctctctgggcagcttTCCAAGGTCTGTTTGGTTGTCACTGCTGTTGAATCTATCTTTTGatcctgttctttttctttcattcctttCTCCACTGTCTTGCCactctcctccttcctcctaTTTTCCcaattttttgtgttttttttcatttcttttatttcaccatttcCTTGATGGAGAGACTGAAGTAacttttaaaaagttgttttacTCCATAATTTTCAGTTTGTGGCATGGcattgagttttgtttttgttttgcggTCTTAAGCGATGAACTACCTGTTTATGTATTGACTTTGTGTCCTCTATACGTGGATATCGTATTTAACTTTGCACACTACTTGTTAAATACCTTGGCTAGCTAAATGCTAGACCTACAATCATGTGACAAATACATTGTAGCAGCAAAAAGCAGAGTCGCTCCCTTCAAATCTCATACCCAAATCTGTCCAATACCAGCTACGAAATATAGCGATTTCCTGATGGTCAAATGGAGTGCAACTGGGAGATTGTAAAGACTTCATTCCACGTCAAtgatattaaatgttaaaagtatttaatgtgTACCGCACACAAAATAAGCCCCACGTTATCCATATTTGGCTTTTCAAGGCAACATAATGTTTGCTATGAGGAAACTGGGCACTTTAGGCCTGGCGGGGCTGGTACACGGACCAAGGACACAATCTGTTTTGTTCAGAGTCATCCTTTTGCATTGACTTAGTAAGTTGCCTTGACGCCAATCACGTGTGCGATCTCCCTCCAGCTGCTCCTGACTGTTCGTTATATACTGAGTGTTGGCTGGAGGGCATTTAAACTGTGACAATCCTCTCTCATTCCAGCtttttgtgggtttgttttaaGCAGagaaacttttaattttaattttaaatctctctctccatcctcctTGATGGCACATTGAAGCCAAGGGAGCACAGCGCTTATTCTTGCCACCATCATTCAGAAACGGTCTACTGCGAAAAATTCTCAGTCTCACAAAGTGGGAGATAAATAGTCCTGCTTTGAGAAATTACACAGgtgttttatcttattttattccGCCCTTAATgggaaaataatgaaagcagCTTCAGGACTGTTCTTATCTGATATGACGATCATACGTGTTGCAAATGACGCAGCTCTGGCTGCACCTGGGGAATGCAAAGACAGTGGCAGTACGTCACTGGCAACAGATATTTAGCTCTCCTGTCTCCTTCAGTGATGGCATATGGGGACCCTGTGCTCCCTGCAAGTATGTTTCAGTCCATGAAAGTACAGGCTTGTCTTCAAGTCTCGATTTAGAGAGGGAATAGCTTTGTGCATGAAATTCTCATTGATTCATTTTGTAACCAAAGTGTTAAAGTGCGGAGAAAAGACAAAGGCAGAAAATGTATATCAATCGGAATATTCACTTTTgtcttttcaattttatttattattgagcCCCCCATGACTTTATTGGTCTCGTGCATTTCTGGTTGAGGCTGCCAAGGACAAAGATGCTGCTCTTATTCTCCATAGACACTTAAGTGCTTTGATCATAGTTGTGTGATCGGCAAAGGGTGTAGCTTTGGAAGGGTTGCACCGTGGCTGTGCAATAGGTGTGTGTGGTGGGAGAAGCTGGCGGTTCGAATGGTACTGGGGAAGGTGGAGTGACATGTGTGCCCGTGGGCTTTGTGTAGCTACAGGAAACcccctttctgtttctctcagGAATCCAGCTGTGGACCCCACTGCAAAGCCCTCTGaatgttcatatttaatggTATATGTTTGCATATAGAAGAAAAAGGCTCTATTAAATGTTTCAAGGGTTTTTTAAGGGAATTTTGATTCAGACTTATTTTTGGGGttattgtgatatattgttaTATGACATAAAAGACTGagaccacccccaccccccggcACGATTATGTTCTTACCAATGCAATTTGATcgtatacaatattttaattgtaagatGACCTTAACGGCCAACTGAAACCATAGAATTAGGATGTGTGTTTCAAACATTAAGAAATAGACGAAGAAATAAGaccatttgtttgtgtatatggATCAACTAGGTGAGTTTAAATCCACAATCATGAGTGACCATTGTGACAATTAATTTTGGGGGCTGCCTATGTTGTAcagtatactgtatttattatattagaGATGTGGATAGCAGTTACATGTTCCTCTCACCCGTCATGCATCTATATAACATCTGTAAACCCTAAATAGTTTATCGGTGATGGACTCGATGGAATTAGGGTTGAATATCAATTTTACCAGGttgtttcatattaattaaataaattagtgaTTAATTGAAACTATGACATtccaaataattgtaaaatgtgaacaatagagtttttgtgtttggttttatgtttatttttatttttttaaacaatatcgAAATGGTTTTCAAGACCAAGACtgttacgtgtgtgtgtatgtatgtatatatatatatatgtatgtatatatatatatatatatatttatatatatatatatatatatatgataaaaacaATTTAGAAACCACTACT

Function

GO: NA

KEGG:

id description
K17988 TECPR1; tectonin beta-propeller repeat-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145599 lncRNA downstream 133432 10169248 ~ 10169622 (-) True G116256
TU145598 lncRNA downstream 139532 10163278 ~ 10163522 (-) True G116255
TU145572 lncRNA downstream 158455 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 514475 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 525705 9774306 ~ 9777349 (-) True AMCG00018390
TU145719 lncRNA upstream 276036 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 405569 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 637898 10970880 ~ 10971087 (-) True G116365
TU145736 lncRNA upstream 640113 10973095 ~ 10973307 (-) True G116367
TU145737 lncRNA upstream 644240 10977222 ~ 10979678 (-) True G116368
AMCG00018420 mRNA downstream 71853 10223672 ~ 10231201 (-) True AMCG00018420
AMCG00018419 mRNA downstream 84566 10202779 ~ 10218488 (-) True AMCG00018419
AMCG00018421 mRNA downstream 104649 10196209 ~ 10198405 (-) True AMCG00018421
AMCG00018418 mRNA downstream 113696 10174420 ~ 10189358 (-) True AMCG00018418
AMCG00018417 mRNA downstream 152545 10147532 ~ 10150509 (-) True AMCG00018417
AMCG00018427 mRNA upstream 9160 10342142 ~ 10366255 (-) True AMCG00018427
AMCG00018428 mRNA upstream 44311 10377293 ~ 10384857 (-) True AMCG00018428
AMCG00018430 mRNA upstream 152191 10485173 ~ 10492963 (-) True AMCG00018430
AMCG00018431 mRNA upstream 229572 10562554 ~ 10580105 (-) True AMCG00018431
AMCG00018437 mRNA upstream 728646 11061628 ~ 11083780 (-) True AMCG00018437
TU145571 other downstream 166285 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 378472 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 1044852 9239812 ~ 9258202 (-) True AMCG00018364
TU144767 other downstream 2529162 7743218 ~ 7773892 (-) True G115581
TU144582 other downstream 3659782 6638342 ~ 6643272 (-) False AMCG00018291
TU145667 other upstream 2219 10335201 ~ 10342089 (-) True G116306
TU145668 other upstream 27147 10360129 ~ 10385216 (-) True G116307
TU145708 other upstream 232813 10565795 ~ 10572002 (-) False AMCG00018431
TU145777 other upstream 728673 11061655 ~ 11068318 (-) False AMCG00018437
TU145811 other upstream 866596 11199578 ~ 11202888 (-) True G116428

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010164 True 1497 mRNA 0.51 9 NC_007123.7 17794284 ~ 17810543 (-)
grasscarp (Ctenopharyngodon idella) CI01000351_01763087_01803479.mRNA True 5984 mRNA 0.46 24 CI01000351 1762646 ~ 1805572 (-)