RNA id: AMCG00018427


Basic Information

Item Value
RNA id AMCG00018427
length 3004
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00018427
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10342142 ~ 10366255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGGTGTTGTTCTGGTGGAAATTTCAGAAGTACATAAGAAAATCAATCAAGAACTAGAAGAGAACTTTAAAAAATTTCACAAAGAGATCATTTCTGAGTTGGAACGGAAAACTGATATGGATGTGAAGTACATGACTGCAACCTTTAAGAGATACCAGACAGAGCACAAAATGAAATTAGACTCTCTAGAAAGGTCGCAGGCCGATCTGAAGAAACTGCGGAGAAAGAGCCAAGGGAAGAACGCCATTAAGTACGAGTCGAAGGAGAACGAGTGTATGGAGACCATCACGTCGCGGCAGATGGAGATCCAGAAGTTCATTGCAGAGGGCTGCAGGGAGGCCCTGCTGGAGGAGAAGAGGCGGTTCTGCTTCCTGGTGGACAAGCACTGCACGTTCTCCTTCCAGATCGGGGCTTTTCATGACAAGGCCAGAGAAATGCTGAATATTAAGCTGCCTACCTGGCAGGAAAAGTGTACTGATGCCACGAAGGTGCCAGACAGTGTGTTGTCAATGATCGAGGGTCTGCGGACCCCTGTGTCTGTGACCCCCCAGCCCTCGCCTCTGATGGAGCGCTACAACATGAACACAGACACGCCGAAGacgccccctgcccccccactgAAAGCACATCCCAGCCCCCTGGCAGACATGTTCACCCCATCAGCCAAGGTCCCTGTGACAGCAAATAGGATCTCAGATAACAACAACGAAGATATCAGCCTGCCCAGGTCGATCTCCGTGTCCACTGGGCTGAACATGATTAAGAGGCCAAAGGTCAGGACCATTTTCCCCCACACAGCCGGCAGCAATGAGACGCTGCTCAGCTTTGACGAGGGAGACATCATCACTCTCCTGATCCCTGAAGAGAAAGATGGCTGGCTGTACGGGGAGCTGGAGAAGTCCAGGCAgAGGGGTTGGTTCCCATCCTCTTACTGCCGCCCGTACACAGAGCCGCTGCTGAAGAACAGCAATGCTGCCCCAGTCCGCAGTGCCAGTGTAGCTAACCTCACCGAGCAGGACCAGGGGGCCATGGTGCTGCCCCCACCAGACTACGCAGACCCCACACCGAAGAGGGCCACCATGTTCAAGAGCGCACAGTCTTCTCCTGAGCACACGGTGTCTGAGCCCAATGGCATCGGGAAGCCTCCTTTCCTTGGAGGAGGAAACCCATTTGCGACTGTCAAGCTCCGACCGACCGTCACTAATGACAGATCGGCGCCCATCATCTGAAGCTTCTCGTGGTGGTCCTACCCTGGCAGGCTGGCTGCTCGGGGGCTCCTCCAATGCCTTGTGTGAATTCCCTGACGTCTTCAACCTTCTGCagcacacactcgcacactcgcgtagagagagagaaagagagagagtttatttatgtaactgtaaaacaaatgcaaagagttatatttttaagagatgtttcttttttgttgccGTTGTCATTGTGAATAATTATACAGACGCATAGTGTCATCATGTACAGACAAATCTGGACAGGGTGTTTGGTCATGCTTGTCTATTTTTCGCCCCTTGGAAGAATACATGTAgacaagaaaaaatgtatatattaatacatcactgtaaatgaaaataaccCATTACTTCTGTCTGCTTGCTAAATCTACCCAGTTAAAGGATATTTGCCATAGGATGCTGTATGAAAGTATGCTGTTTGGGATATGGAGTCTTTCTTCTtgcataaatgtaaatgtttatgatATTGTTATTAAGGTTAACATGTTTATGTTCTTCAAGTCACGGATTTCCCTAAAAATGCAGTCGTGTTCTTGGCATTCTAGTCAAAAGCTTAGGTGTTTTCATTGCCACAGTCCTTAAGCAATTCCTTACTGGTGAGTATACAGTATTGGGACCGATTATTCCTATACAAAATACACTGCAGTGATTGTACCAAAGAAAACTAACCCCTGACAGTATGCCGCAAGCTGACAATGCACAAGGCTTCTGTGTTTGGCTGTTTCAGGAGTTCAGCCAttaagagaaggaaaaacaaattgatattTTCCTCTCAAGCccaagagaaaatgtttattacttTGCCTCCATTCCCTGTACAGACACTGATGTGCATACCTGTCTTATAAGTACTGGGGAGACCTTATTCTTTGTTGAGGTACGCCGTTACTTTAAATCAACTTTAAACATTTCGTAAAGCTTTTCAGAAAAAAGTTTGCCTTAAATATGATTTCATTCTTGTAACATTTTATCACAAAACAAGCCCTCTTCCTGCTTGCTAACAGTAGACTCTACACAACATagtactgtatgttttgtattcaaATGCATCTATGTAGTTGTTTTTCTCATAAAACCCAGTGGACAAATAAAAGCATATacttgcttttctgtttgtttgtttctctcctaCCAAGATATTTCTGATAGGAGTTTTTGGATTATAATTATAGTGAATGGTTGTTGTGGACATATTGATCCCACCTCAGCATTCTATATCCTGCACGTCTACCCCAATACAAttaagtttttttaatatataaactatcatttcatatttttagcTGTGTATGGAAGTTTAAGTTGAAATACCACATGTGACCAgtgatttttctttataaaataaagagcTCTTCAATTTCTTATATTAAGGTTTACTAATTATATATCaggtttatttaaacatatcttaAGGCTGCTTATATAATTTgggtttttcttctctgttcctGGTTACAGGGAAGACTCCAGTATTGTACAAGACTTATCAATGGAAATCACAATAATACTTCCAATAAGGTTCAAGCAAGGAGATTGTGCAATGATCcatgttttaatactttaatttactgtactggaataaaaacatctgatttTACCAGGGGGGTTAATGTTTGTGAAGCTCTTGCTGACAGCTGTACTCTTGATGTCAATCCCTGTGAGTGACAAAACAGCAAACCAAGCCAAAAATGTGGTTTTGACAATAATTACACTGCCCATCCCATCTACACAGTTTATATAGGAAGACCAA

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG:

id description
K20127 BAIAP2L1, IRTKS; BAI1-associated protein 2-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145599 lncRNA downstream 172520 10169248 ~ 10169622 (-) True G116256
TU145598 lncRNA downstream 178620 10163278 ~ 10163522 (-) True G116255
TU145572 lncRNA downstream 197543 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 553563 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 564793 9774306 ~ 9777349 (-) True AMCG00018390
TU145719 lncRNA upstream 242763 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 372296 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 604625 10970880 ~ 10971087 (-) True G116365
TU145736 lncRNA upstream 606840 10973095 ~ 10973307 (-) True G116367
TU145737 lncRNA upstream 610967 10977222 ~ 10979678 (-) True G116368
AMCG00018424 mRNA downstream 9160 10303054 ~ 10332982 (-) True AMCG00018424
AMCG00018420 mRNA downstream 110941 10223672 ~ 10231201 (-) True AMCG00018420
AMCG00018419 mRNA downstream 123654 10202779 ~ 10218488 (-) True AMCG00018419
AMCG00018421 mRNA downstream 143737 10196209 ~ 10198405 (-) True AMCG00018421
AMCG00018418 mRNA downstream 152784 10174420 ~ 10189358 (-) True AMCG00018418
AMCG00018428 mRNA upstream 11038 10377293 ~ 10384857 (-) True AMCG00018428
AMCG00018430 mRNA upstream 118918 10485173 ~ 10492963 (-) True AMCG00018430
AMCG00018431 mRNA upstream 196299 10562554 ~ 10580105 (-) True AMCG00018431
AMCG00018437 mRNA upstream 695373 11061628 ~ 11083780 (-) True AMCG00018437
AMCG00018440 mRNA upstream 722186 11088441 ~ 11090570 (-) False AMCG00018440
TU145667 other downstream 53 10335201 ~ 10342089 (-) True G116306
TU145658 other downstream 32947 10307590 ~ 10309195 (-) False AMCG00018424
TU145571 other downstream 205373 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 417560 9919046 ~ 9924582 (-) True G116165
TU145207 other downstream 1083940 9239812 ~ 9258202 (-) True AMCG00018364
TU145708 other upstream 199540 10565795 ~ 10572002 (-) False AMCG00018431
TU145777 other upstream 695400 11061655 ~ 11068318 (-) False AMCG00018437
TU145811 other upstream 833323 11199578 ~ 11202888 (-) True G116428
TU146006 other upstream 1544759 11911014 ~ 11911336 (-) True G116577
TU146385 other upstream 2886830 13253085 ~ 13255769 (-) False AMCG00018522

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000351_01829735_01856283.mRNA True 1600 mRNA 0.49 10 CI01000351 1829611 ~ 1856283 (-)