RNA id: AMCG00018430


Basic Information

Item Value
RNA id AMCG00018430
length 3415
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00018430
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10485173 ~ 10492963 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaggaggagaagaagaagagagagccGCGTCTCCCGCAcgcatttatttttgaagcaaAGGCGCAGAGCCATTTCGTATCTGTCGTCCGGTAGCAAACGGGTGTTCCCGGTCCTATTCTGCTGCCGCCTGCCTGTCTCTGCAGTGCATGTGCGCAGTGGCGAGTCTGCGCATCAGTGAGTCTTGGACTTCAGTGCTGCGGGATGACGGCTGCGCAGCTGTGCGTCTGCCTTCCCTTCTTGTTGGCGCGGCTGCTGGATGCGACCGAGAGAGACGACCCGCTGGCAGCGTCTATCCCAGGAAAAGTGGCCTTTCATCAGATCGAGGGCAATAACACTTACCTTCGCAGCACCGGTGAACTGGCCACCAACGTCACAACCGTGGCCGCCTTCGAGCTGTCCGACCCCCGGCGCGCCTTCCGCTTGGCCGGCTTCTCCTACATGTGGGACATAGGCGATGGGCAACCCAAAGTACAACACCTGCCCTATGTGAGGTACAATTACTCAGTCCCGGGAAACTACACTGTCAAACTGAAGGTAGATGCCTACTGGAATAAAACCGGAAGCAGATATCAGTCACCAAGGACTGCATCCTACATCACTGACCTTAAAGTGTTAGCGTGTGCGCGTGGTCACAGGGCACAACTCATCATGCTGGCCCTTTCAGATGCAGTCAGGACTATCGAGGTGACGGCCCCCAGCAGCGTCAAGGTGGACCAGGGTaccagcctgtctgtctgcatcaCTGGAAGCCCCCCGGTGGTGCTGTGCTGGGTGATGGTCCCAGACTGCGTTGCTGTCTCCCCCACCCCATGCCATCTGGTGATGCTGTACGGAAACACCCTGTACCTCAACTACACCTTCACCAGCACGGGCAGGTACTGCCTCAACATGACCGCCAGGAACGACATCAGCTCGCTGCAGAGTTCACACGACATTACTGTGTCCAAAGGAGTGACTCACCCGGTGTTCTTTATCCTGCCCTGCGCCACCCTCATCATCATCTCCCTCGGTTTCATCATCTTCTCTGTGTGCCGCCCCCACCGCTCAGCTGCGAAGATCAGGGTGGAGGAGGCCAGCTTTGACTTTTCTTGCCACTTGGAGCAAGTCTCGTCCAGCAGCTCGCAGTTTGAAATGAGCTCCCGGGAACTAAGCGGTTCCCACTCGTCTAAGTCCGTTCAGACGACGGTGAAGGTTGAGTGTGCAGGGGAGgcctcccccctcctccacaAACCTGGGAGGCCAGTCGTGACCTACCTCATTTAACTGCCGCCCGGTGCCCTGTGCCTGGTTGgccctctcccttctctcacAGCCCCGCCAGtacagtctttttctttttattaatggTGCAAACACGCACTGCCATTCCCTGTCCTGCTTTACAATAAGAGCAATCGGGAAGGGATGCTACAGGatggaggaagggagagggggcAGTGTGGTGCTGTATTGTAATGGGTCCGTGGGTCCCAGGGTTTGGAGCTCCCTCACAGCTGACTGGTAAACCTGGGAGAGAACAGGGCTGgccaaaattaatgttttttaataccTACTTGAGTAAGCATGTGGGCTACAGGAGCCATTCCTGTAATCTCTCTTTCTAAGCCAAGTGACTAGCACTTAAGAGGTGTGATGCCCAAGTCCCTGTCTAGAGATGTGCTTTAATGGTGCAGTGGTTGACTATATGTATAGAGCACAGTATTCACCTATGACATTATCTTGATCCTGTCACagataatagttttttttaacactttttcatGGACTTATTGTTTCATTCATCACTGACAAAATGTTATACAGGTCTTCATGACGTTGCATTTAAACTGAAACCCTGGGAACTGCTGTGTTTTTTGGTCATGTTTTTGTTCAACCAGAGCTCCCCAGAGTCTCTCGCTGGCTCATGGTTTGTACACTTATTGTTGATTCCTCTTTGTTTAACCCCTTCACTTTTGTCAAAAACGTCTTGCAGTCGACTAAGAGTTTGGTTGCAGGTGGGGGCCGGTGCGGAAGAGGGCACAGAGGTGTTCTGAAAGGCATCTCGCACTGCAGGGCCAAAGCCATCAGGGTTGTGAGTTACTGTAGATCCTCCAGGGAAATCTCCAccaaaattatattgtaaaaagaGGAAAATGACAATCGCAGCACAGCCGGCAGCCAACCAATTTGTggttattaaattattacacGGCAGGGCCTTTTGGAGTTTGTGTGGGTGGATCGAAAAGCTCTAGATGCCCTCTGGTAATGTGTAACTAGTTTTGAGCACCTTTTAGTGTTGCACAGTGAATTGAACCACAGCATGCTCTTAATTCCATTTGCCAAAGGAAGACTGCATTAAGGAGCAGACCGCATCTGCTCAGCAGCCCTTATGAAATGGACATTgccgtgtctgtctgtgtttcttcaTTGCTTTGGCTGGCTTGAGTCAGTAGCAGAAATGCACTTATCCCCTCTCCTTTCAGATGGAAATCGTGCACTTAATCAAGCTGGTCAATGCAGATCTAAGCCAGGATGAAACTGTAATTCAATCATTGCAAATTGCAGGCCCTGTACTCGACCTGGACTTGGATAAAATCTAAATTCTTGACTCACCCATTAAAACTTCAACCCtttactcagttgcagcttgaTTTTTTGTCACTtccttctaatcataaatgtaactgcaatAATGTTTAACTGACCCTTGATCTCTGGAGGGAATAATGAAGAATCCTCTTGGGAACAGAACTGTCCGATCAAGTACTGGGTCTAGCAGTTGCAAATGGCCTGTCAAAATTTAGTCCATGCCAGAGTGTCACTTGGTAGTTTGAAGAGACTGAATCAGTAATTTCCCTGCTTTCATTATTAATTGTTCAGTTCCTAAAACATTATGGAGATGCTATTTTAATGTACAGATGCTGTTCAATACTAGCCACTTTTACCTGACAGCCTCATATTTGTCAACCATTACATAACATTTCCAAATTATAGCAAGAGGAAATTGTCAAAGCCGGAAACCTAAGGTCTCACACTTGTGTTGGTGGGGATTTCTCCCTCGACCATCTTGCCTGTTGAAATGGTACAATTTTACAGACTGTGTCAATGAACCTCCTACAGGCAATTGCTTTTTGGTCTTTGCCCTATTAATCTCAAATGTGTGTCAACTTGAAGTGCCTTTTTCTGACTTTATAGTGCTCTgctacagtattttttaattatgtatcttcctttcttttcatgtttttgtttgtcatctttagttgtattttatttttaaaattttaatcacGATTTGTAGGTGACCATGATCTATTTATCTGAAttgggggagagaaaaaaagaaggtTCAAATAATGTGTGGGAAAAAGATTGTTCAAACAATTGTTACTCCTGTAAGtccataaatatatgaataaagaaacaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145599 lncRNA downstream 315551 10169248 ~ 10169622 (-) True G116256
TU145598 lncRNA downstream 321651 10163278 ~ 10163522 (-) True G116255
TU145572 lncRNA downstream 340574 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 696594 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 707824 9774306 ~ 9777349 (-) True AMCG00018390
TU145719 lncRNA upstream 116055 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 245588 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 477917 10970880 ~ 10971087 (-) True G116365
TU145736 lncRNA upstream 480132 10973095 ~ 10973307 (-) True G116367
TU145737 lncRNA upstream 484259 10977222 ~ 10979678 (-) True G116368
AMCG00018428 mRNA downstream 100316 10377293 ~ 10384857 (-) True AMCG00018428
AMCG00018427 mRNA downstream 118918 10342142 ~ 10366255 (-) True AMCG00018427
AMCG00018424 mRNA downstream 152191 10303054 ~ 10332982 (-) True AMCG00018424
AMCG00018420 mRNA downstream 253972 10223672 ~ 10231201 (-) True AMCG00018420
AMCG00018419 mRNA downstream 266685 10202779 ~ 10218488 (-) True AMCG00018419
AMCG00018431 mRNA upstream 69591 10562554 ~ 10580105 (-) True AMCG00018431
AMCG00018437 mRNA upstream 568665 11061628 ~ 11083780 (-) True AMCG00018437
AMCG00018440 mRNA upstream 595478 11088441 ~ 11090570 (-) False AMCG00018440
AMCG00018439 mRNA upstream 598333 11091296 ~ 11118823 (-) True AMCG00018439
AMCG00018438 mRNA upstream 647126 11140089 ~ 11142854 (-) True AMCG00018438
TU145668 other downstream 99957 10360129 ~ 10385216 (-) True G116307
TU145667 other downstream 143084 10335201 ~ 10342089 (-) True G116306
TU145658 other downstream 175978 10307590 ~ 10309195 (-) False AMCG00018424
TU145571 other downstream 348404 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 560591 9919046 ~ 9924582 (-) True G116165
TU145708 other upstream 72832 10565795 ~ 10572002 (-) False AMCG00018431
TU145777 other upstream 568692 11061655 ~ 11068318 (-) False AMCG00018437
TU145811 other upstream 706615 11199578 ~ 11202888 (-) True G116428
TU146006 other upstream 1418051 11911014 ~ 11911336 (-) True G116577
TU146385 other upstream 2760122 13253085 ~ 13255769 (-) False AMCG00018522

Expression Profile