RNA id: AMCG00018431


Basic Information

Item Value
RNA id AMCG00018431
length 741
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00018431
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10562554 ~ 10580105 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTCCAGTGAGGACAGCAGGGTGGGGTGGAGCTCCCTCTGCATGTGCATGATGCGACTGCAGCGCCACATGGGGGCGGTGGCACGGATGGGCCCGGGGTCGGCCGAGTGGGGCTGGGCACCGACCAAGCTGGGCTGCTGCTGGCCTGAGTCTGCACACAGGTACAGCGTGCGGATGGGGAAGTACACGGCCTGCGGATACACTCGCCCCACCTGGAGGGAGCAGGGCAGAAACACAGGAGGAAAGAGGAGTGAGACTGAGAAAGTTATGGGCCCTGTTCTGAAAGGTTTGGAGGTCATCGAGTCCACCAACCTCAAGTACTTCACCAAGGAAATGACAGCCGAGTTCTACGCGCTCAAGGGCATGTTCCTGGCACAGATTAACAAGTCAGACGAGGCGAACAAGGCCTTCTCGGCTGCGGTGCAGATGCACGACGTCCTTGTCAAAGCCTGGGCCATGTGGGGTGACTACCTGGAGAACATCTTTGTGAAGGACCGCCAGCTGCACCAGGGCGTCTCCGCCATCACCTGCTACCTGCATGCCTGCCGGCACCAGAATGAGAGCAAGTCCCGCAAGTACCTGGCTAAGGTAGCACTTGACCTGCTGGCGGATCTTCTGGAAGCAGTCAACGATGGgcacggtggggatggtgtggATGCGGCTCAGGATGTCCAGTGCCACGTTGACCAAGCCCTGCTTGCGGCCGATCTTGCCGTACTGGATGATGGCGGAGGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145599 lncRNA downstream 392932 10169248 ~ 10169622 (-) True G116256
TU145598 lncRNA downstream 399032 10163278 ~ 10163522 (-) True G116255
TU145572 lncRNA downstream 417955 10143425 ~ 10144599 (-) True G116236
TU145444 lncRNA downstream 773975 9784430 ~ 9788579 (-) True G116136
TU145440 lncRNA downstream 785205 9774306 ~ 9777349 (-) True AMCG00018390
TU145719 lncRNA upstream 28913 10609018 ~ 10671019 (-) True G116352
TU145723 lncRNA upstream 158446 10738551 ~ 10739008 (-) True G116355
TU145734 lncRNA upstream 390775 10970880 ~ 10971087 (-) True G116365
TU145736 lncRNA upstream 392990 10973095 ~ 10973307 (-) True G116367
TU145737 lncRNA upstream 397117 10977222 ~ 10979678 (-) True G116368
AMCG00018430 mRNA downstream 69591 10485173 ~ 10492963 (-) True AMCG00018430
AMCG00018428 mRNA downstream 177697 10377293 ~ 10384857 (-) True AMCG00018428
AMCG00018427 mRNA downstream 196299 10342142 ~ 10366255 (-) True AMCG00018427
AMCG00018424 mRNA downstream 229572 10303054 ~ 10332982 (-) True AMCG00018424
AMCG00018420 mRNA downstream 331353 10223672 ~ 10231201 (-) True AMCG00018420
AMCG00018437 mRNA upstream 481523 11061628 ~ 11083780 (-) True AMCG00018437
AMCG00018440 mRNA upstream 508336 11088441 ~ 11090570 (-) False AMCG00018440
AMCG00018439 mRNA upstream 511191 11091296 ~ 11118823 (-) True AMCG00018439
AMCG00018438 mRNA upstream 559984 11140089 ~ 11142854 (-) True AMCG00018438
AMCG00018447 mRNA upstream 593750 11173855 ~ 11196168 (-) True AMCG00018447
TU145668 other downstream 177338 10360129 ~ 10385216 (-) True G116307
TU145667 other downstream 220465 10335201 ~ 10342089 (-) True G116306
TU145658 other downstream 253359 10307590 ~ 10309195 (-) False AMCG00018424
TU145571 other downstream 425785 10129560 ~ 10136769 (-) False AMCG00018416
TU145480 other downstream 637972 9919046 ~ 9924582 (-) True G116165
TU145777 other upstream 481550 11061655 ~ 11068318 (-) False AMCG00018437
TU145811 other upstream 619473 11199578 ~ 11202888 (-) True G116428
TU146006 other upstream 1330909 11911014 ~ 11911336 (-) True G116577
TU146385 other upstream 2672980 13253085 ~ 13255769 (-) False AMCG00018522
TU146918 other upstream 3923298 14503403 ~ 14520875 (-) True G117267

Expression Profile