RNA id: TU145779


Basic Information

Item Value
RNA id TU145779
length 1597
lncRNA type read_through
GC content 0.39
exon number 2
gene id AMCG00018440
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11088174 ~ 11146940 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACTGGTTAGGGAGCATGCTTAGATGGTGTCGCGTAATGAGGGAAAATCAAATCGCTCTGATGGAGAGTTGTACACTTGAGTACGTGCTGGTCAGAGGCAGGCTGACCTGTACTAAATGAGGCGAACAGTCCTTTATCTGTTATTAGGACTTTGGCTGTTTGGCTGAAAACAGCAATTGTGCCACTCATAGTATGAAATCTAAGCTTTGTagcatttgtaattatttaaaatatataacataggATGTGGGGTCCCCTTCATTCTTTCCCAACCGACTCCAAACTTTGTGAGACATGAACTTTTCTTGTACAGTGTATTGTAAATGAGTTCTTTGCCGAGGTAAAGATGTAACACTATCAACAAGTACCTTATTTTAACTGTTATTTACAGAGTTCTgtagaaaacaatgaaacaaacaaccaaacaaaacagttcTGGTTGCTTGCAGCTGAGACCTTTCATGTGTATATCTATAATCACTGTAGAACATTAGaagatatttacttttaataagattaatttattgtttgtaCTATGCTTCTTTTTCGAGCATCACCATGTAAGAGTATGTTATAGCAGGCTAaagaaaaattgtaaaaatgagagagagagtgacaggtCATTTTATCcatgttaaatgtgtattattaagtatgttttgtttgtgtgaactAGCCATGTCAGTCTAATTTTTGACATCCTTTATGGGatctacttttttttgttttccatgttttttttgttgttgttttttttacatgtaaataaatgctTGTCTAAACACTGAGTAATGCCGATAACCATGCAAAGGAGTGAGGATGTAGAGTGAGCATACAGTATGGAGGTGTGTACAAACCATGGCCTGTATGGTTTGGCTGAATTACAGTGGGGTTTGCTTATAGGGATGAAGTGCATTCTGTTGTTGAGTCTTGCGATCCACAGAGAGGCTGATAAGAAGACTATAGACATCTGAGCCTCAGTGTTCTGCAACAGATCACTTCCCACATGGTGAAGTTACACAGACACGCACGATTCTCCTGGAGCTCAATACATTCTGGGTGATGTGGAGTGGGacacaaaaaccaaaacaaaccgCAAACTGTCACTGGCATTCCCCTTCTGCAGACCTCTGTGGATTAAGAACACACGTCcctcttttttttaactctgtGTCTTTTTGCTTTCCAGTTGcgtttgatttttattattttttgttttgtgtgtgtgtgtgtgcttctaATATAGCAGGTGCAGAGGTGTTCGGTGTAAATGATCTGAAAACAACCCaagccaacaacaacaaaaaacaaattggaaatGGATTACAATGTGGATAGTTTGTAGAAGCTCAAATAATATGTCTGACTGAGGGGATATGAGATGTGAGATGATCAGGTGGTTGGCAGAAGCTATCCTGAGATCCTTTCTCCTAGGTACTCGTGATGAACCACTGCCGACAAGAGAGtgagtgtatttgtgtgtgtgggtacgTGTGCACATGCACAATGGCTTGTCCTTTCTGCTGCTAAACTCTGTGCTGTTTGACTCTTGCATGTGTTAATCTCCAATAAAAACACTACCAGTGTGACCTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145737 lncRNA downstream 108496 10977222 ~ 10979678 (-) True G116368
TU145736 lncRNA downstream 114867 10973095 ~ 10973307 (-) True G116367
TU145734 lncRNA downstream 117087 10970880 ~ 10971087 (-) True G116365
TU145723 lncRNA downstream 349166 10738551 ~ 10739008 (-) True G116355
TU145719 lncRNA downstream 417155 10609018 ~ 10671019 (-) True G116352
TU145812 lncRNA upstream 52638 11199578 ~ 11202888 (-) False G116428
TU145841 lncRNA upstream 105419 11252359 ~ 11253565 (-) True G116446
TU145849 lncRNA upstream 133426 11280366 ~ 11353097 (-) True G116454
TU145912 lncRNA upstream 364523 11511463 ~ 11514493 (-) True G116501
TU145923 lncRNA upstream 384858 11531798 ~ 11532070 (-) True G116511
AMCG00018437 mRNA downstream 4394 11061628 ~ 11083780 (-) True AMCG00018437
AMCG00018431 mRNA downstream 508069 10562554 ~ 10580105 (-) True AMCG00018431
AMCG00018430 mRNA downstream 595211 10485173 ~ 10492963 (-) True AMCG00018430
AMCG00018428 mRNA downstream 703317 10377293 ~ 10384857 (-) True AMCG00018428
AMCG00018427 mRNA downstream 721919 10342142 ~ 10366255 (-) True AMCG00018427
AMCG00018447 mRNA upstream 26915 11173855 ~ 11196168 (-) True AMCG00018447
AMCG00018448 mRNA upstream 59802 11206742 ~ 11209424 (-) True AMCG00018448
AMCG00018446 mRNA upstream 74889 11221829 ~ 11236984 (-) True AMCG00018446
AMCG00018455 mRNA upstream 223593 11370533 ~ 11371192 (-) True AMCG00018455
AMCG00018460 mRNA upstream 240048 11386988 ~ 11393467 (-) True AMCG00018460
TU145777 other downstream 19856 11061655 ~ 11068318 (-) False AMCG00018437
TU145708 other downstream 516172 10565795 ~ 10572002 (-) False AMCG00018431
TU145668 other downstream 702958 10360129 ~ 10385216 (-) True G116307
TU145667 other downstream 746085 10335201 ~ 10342089 (-) True G116306
TU145658 other downstream 778979 10307590 ~ 10309195 (-) False AMCG00018424
TU145811 other upstream 52638 11199578 ~ 11202888 (-) True G116428
TU146006 other upstream 764074 11911014 ~ 11911336 (-) True G116577
TU146385 other upstream 2106145 13253085 ~ 13255769 (-) False AMCG00018522
TU146918 other upstream 3356463 14503403 ~ 14520875 (-) True G117267
TU147067 other upstream 3589198 14736138 ~ 14738312 (-) True G117377

Expression Profile