RNA id: AMCG00018443


Basic Information

Item Value
RNA id AMCG00018443
length 1371
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00018443
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11165943 ~ 11170854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCCAAACGGTACCCCGTCAACATCCGACTCATCGGAGTGATGCACAAGGAGAAACACAAGTTTTATTCTGAAGACCTTGACCTTGTGAACGTGACCAATGTGAAGCAGAAGTTTAAGAAGAATGGTCCAAGCAAGTCTGTGTTATGCCTGAAGTTCTTGGAGAGTTACTGCAGCAGCCTTCTCCAGTGTGAGGAAAAGATCTCCAGGAGCAATGAGCTCATCCACATTGTGGTCATGCCGTCGGAGGAccaggaggagagcctgggcAGTGCAGTGAACGGCAAGCGCTTCAGCGAAGGCAATGTGAGCCAGCCCTTCATCACTGAGACGTACCGCTGCGTGGCGCCCTTTGAGACCAAGGACACCAAGAACCGGCCCTTCAAGGTGGCGGTGAACGAGGTCGTGGATGTGCTCATCAAAGACCCAGCAGGCTGGTGGCTGGTGGAGAATGAAGACAAGCAGCTGGCCTGGTTCCCAGCGCCGTACTTGGAGAAGAACGAGGAGGATGTAAATGACAACCTGCCAGACGTGTCCGAAGAAGGCATGCTGTACTGCACATTAAGAAATTACGAAGCCAAAATTGCAGACGAGCTCTCAGTGAACATCGGCGCTGTGGTGGAGGTTTTACAGACTTCTGATGATGGATGGTGGTTGATCAGGTATCATGGGAAGGCAGGTTACGTACCTTCCATGTATCTGAAGCCCTACAGGAACCCGCACCTGAGGTTCCAGAATCTGCAGCAGGAAATGCGTAGCTCCAACCTCAACCTGTCCCACTTGCAGAGCACCGAGGCAAACCTACTGTCCCTTCAAAAACGCGACCTAAGCCGCTCCCAGGAGATCCTGCAGTCGCGGCGCTCCTCCCCCCCCGCAGGGGGGTTCCTACTGTTGCCCTCGGACAAGAAGAAGTCACGCTCCCTGAACCAGCTGTCAGCCCGCAGGCAGGCCTTCGCCATCCCTACCATCACCGTGGAGGGAGacgagagagaggaggagcaACCCCGAAAAGACAGCCTGAGCGAGGAGAGCGAGTTGAGCTTCAGTGACGAGTCCAGCTCCCAGGACAGCGACTTCCTCAGTGTCAGCCAACCTGACATGGCTGACCGGCTGCGCATGAGccgcacccccccacccatggTGGCTGACCGCCAAAGCCCTGACTGCATCAGCGCCACCCTCCCCAGGGAGACGCTCTCCAGTGCCAGATCCGACCCCAACCTCTTCAAGACCCCCACTATCCCCAAGGTGCCCCCCCGGCCCAAAGCCCAGGAGATCCTCACTCGCTGCACAACCATGACCAGAAAGGCAGCCCTGGCATCTAAAACACGGCTGTCCATCGAACTAGAGGAGATCCAAAGCCGCTAA

Function

GO: NA

KEGG:

id description
K17934 NOXO1, SNX28; NADPH oxidase organizer 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145745 lncRNA upstream 82154 11061569 ~ 11083789 (+) True G116374
TU145726 lncRNA upstream 186258 10977022 ~ 10979685 (+) True G116358
TU145722 lncRNA upstream 426768 10738286 ~ 10739175 (+) True G116354
TU145664 lncRNA upstream 806040 10359682 ~ 10359903 (+) True G116303
TU145663 lncRNA upstream 808586 10355972 ~ 10357357 (+) True G116302
TU145839 lncRNA downstream 81565 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA downstream 81565 11252419 ~ 11256165 (+) True AMCG00018449
TU145882 lncRNA downstream 239951 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 244627 11415481 ~ 11415738 (+) True G116479
TU145974 lncRNA downstream 557955 11728809 ~ 11818089 (+) True G116546
AMCG00018444 mRNA upstream 14754 11143263 ~ 11151189 (+) True AMCG00018444
AMCG00018445 mRNA upstream 26636 11131545 ~ 11139307 (+) True AMCG00018445
AMCG00018433 mRNA upstream 112598 11047982 ~ 11053345 (+) True AMCG00018433
AMCG00018436 mRNA upstream 169922 10992157 ~ 10996021 (+) True AMCG00018436
AMCG00018435 mRNA upstream 190464 10958565 ~ 10975479 (+) True AMCG00018435
AMCG00018441 mRNA downstream 26262 11197116 ~ 11199442 (+) True AMCG00018441
AMCG00018442 mRNA downstream 32334 11203188 ~ 11209510 (+) True AMCG00018442
AMCG00018449 mRNA downstream 81505 11252359 ~ 11256094 (+) False AMCG00018449
AMCG00018453 mRNA downstream 125495 11296349 ~ 11296846 (+) True AMCG00018453
AMCG00018454 mRNA downstream 147317 11318171 ~ 11326768 (+) True AMCG00018454
TU145312 other upstream 1553025 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1601539 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1924128 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1964357 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2471224 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 795393 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1344949 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2082489 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2137044 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2849074 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile