RNA id: AMCG00018450


Basic Information

Item Value
RNA id AMCG00018450
length 1820
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00018450
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11371544 ~ 11377395 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAAAGGTAGTGATGCTCCGCGGTGCTTAAAACCGGACAGTTTTTAGTTCCTGTACATGCGATAATATTAGCAGACAGCGGCTGAGTTGCTATGTTATTCAGGTCAGTGCTGGGTGCCTGCACTCTTGGTGTAGTAGGAGCTGCTGCGTATAAAATCGTTCCGCCACGGGTTCGTGCAGCCAGCCTCCATTCCTGCACAAAGCCTTCAGTATTCGCTCAATCCGACATGAAGATAGAGTTACTCCCTGCACTGACAGACAACTACATGTACCTTCTCATTGATGAGGAGACCAAGGAAGCTGCCATAGTGGACCCAGTGGAGCCGTCCAAGGTCGTGGATGCAGTTAAGAAGCATGGAGTGAAGCTAACCACTGTGCTTACCACACATCATCACTGGGACCATGCTGGGGGGAATGAGAAGCTGGTGAAGCTGGTATCAGGGCTGAAGATCTATGGAGGAGATGACAGGGTGGGGGCTTTAACTCAGAAAGTAACGCACTATAATACCTTCAAGATTGGCTCTTTGAATGTGAAGTGCCTATTTACACCTTGTCACACATCTGGTCACATCTGCTATTTTGTCACCAAAGACAATAGCTCTGAGCCCCCAGCTGTTTTCACAGGGGACACGCTGTTTGTGGCTGGCTGTGGGAAGTTCTTTGAAGGCACTGCTGATGAAATGTACAAGGCTCTAATCGATGTTCTGGGGCGTCTTCCTCCCGAGACAGAAAAGTACAACAATGGAGAACCAACTATCCCGTCTACTGTGGCTGAAGAATTTACCTACAATCCATTCATGAGAGTCAGGGAGAAGTCCGTGCAGGACCATGCAGGAAAATCGGATCCCATTGCCACGATGGGTAGCCTCCGGAAAGAAAAGGACAACTTCCGAGTGCCCAAGGACTGACCCTGCGACAGAGACACTCCGCACTCTCCGTTTCATCCCCGTGCACTGCAAGCTTTAACTAGCTCCCATAGTGAACAACACTGCACGCtctttaattatacatattatgtGTAATTTCTCTGTAAATtgaatgtacaaaaaataaatctatattttaatgtctaaaaaaaaatctaccacCTTTCCTGTTTAAGGGactcaaaacaaaagaagaaattaatagaacatgagaacataataGCAGGGAAACTGTCAAATCCAAAATGTGTGTCTTAACATTGTGTGCAATAGTGttacaattgtttttctttttgtatgtcGTTATAAAGCACTAAGCACAAATGCAAACCTTTTGTTACCTAAGCCATAgttctttaaatttaaatgacaaaCTACCCGTTTTAGTTtagctaaataaaaaaaaaagtttatttttgtctgaattctgatatttacatttagttGCATGTCTAAATGAAATGtgcagaaattacattttaagctgGCAGTTATATTTAATgtggaattattttatataacgGGAAGActatttacaattttatttttaatctttaataaattaagtggTTACATTAGtgtcacattattttcttatgaagtattttatgtttacttttaaaatgactatTTCAAGTTGCTTAACTTAAACCagctaaaaatataatttaaatatagctGTAAGTTGTAAGAAGTTGTCATTTTCCACGTTTCTGTTAAACAATGCAGCGTTGGAGCCTGTGCATATCCATATATCAGCAATAAAGCATGTGGTTGAAGGTGATTAACAATAGCAAATTCTGTTGTTTCTTCTGTGAAGTTTTAAGAGTGGACAAAGAAAAGATAATTGGATGTTGTTTTGGGgttgagggagagagagcattTTGGTTGCA

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145839 lncRNA upstream 115379 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 115379 11252419 ~ 11256165 (+) True AMCG00018449
TU145745 lncRNA upstream 287755 11061569 ~ 11083789 (+) True G116374
TU145726 lncRNA upstream 391859 10977022 ~ 10979685 (+) True G116358
TU145722 lncRNA upstream 632369 10738286 ~ 10739175 (+) True G116354
TU145882 lncRNA downstream 33410 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 38086 11415481 ~ 11415738 (+) True G116479
TU145974 lncRNA downstream 351414 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 749055 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 761607 12139002 ~ 12140081 (+) False G116603
AMCG00018452 mRNA upstream 1342 11356959 ~ 11370202 (+) True AMCG00018452
AMCG00018454 mRNA upstream 44776 11318171 ~ 11326768 (+) True AMCG00018454
AMCG00018453 mRNA upstream 74698 11296349 ~ 11296846 (+) True AMCG00018453
AMCG00018449 mRNA upstream 115450 11252359 ~ 11256094 (+) False AMCG00018449
AMCG00018442 mRNA upstream 162034 11203188 ~ 11209510 (+) True AMCG00018442
AMCG00018451 mRNA downstream 504 11377899 ~ 11384556 (+) True AMCG00018451
AMCG00018456 mRNA downstream 24563 11401958 ~ 11408807 (+) True AMCG00018456
AMCG00018463 mRNA downstream 50288 11427683 ~ 11436200 (+) True AMCG00018463
AMCG00018465 mRNA downstream 73105 11450500 ~ 11452474 (+) True AMCG00018465
AMCG00018462 mRNA downstream 110752 11488147 ~ 11514342 (+) True AMCG00018462
TU145312 other upstream 1758626 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1807140 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2129729 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2169958 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2676825 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 588852 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1138408 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1875948 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1930503 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2642533 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile