RNA id: AMCG00018452


Basic Information

Item Value
RNA id AMCG00018452
length 1628
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00018452
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11356959 ~ 11370202 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCATTGCCTCCTTAGTGCAGACGGTGCGGGGGGTCAGTGGCTTCGACTCTGGCCTCCCCGTGCGGGACTGCAGGGAGCTGCCCCTGATGGGAGTCATGATTGAAAACCCTTTAATTGTAACAAAAGATGCAGAGAAAGAGGAGCGATACAACCCTTCAACACCAAGtttCTACAGGTTGTTAGTGAGTGAAAACCATTCAACAGTCAGGGTCTGCTCTGACATTGAAGCAGACGCCCGGCTTCTGTCTTTACTCCACCTGCCTGTGAAGGATCCACAAGATTTTTACTCACTGGGGGACATTCTTGCAAATGGACAGAGCTTGGATGGAAGAGTCATTAATATTCTAGCAGCTGTTCGATCAGTGGCAGAACCAAAGTTTTTCACGACTGCTGACAGACGCAAAGGACAGAGGTGTGAAGTGAATCTCTTTGATGACACTGTTCCATTCTTTGCTTTGGTCTGCTGGGACAATGAGGCCATTCAGCTTGCGCAGACATGGATTCCAAAAGAGACAGTGCTCTTCATTGCCGACGTCCGAATTACCTTTGATAGATTTCGCAACAGTATGATTGCGACAGTGACCTCGAAAACCATCATTACGGTCAACCCTGACACAAAAGAAGCCAACCTGCTATTCAACTATGCCAGGGAGCTTGCTGAAACTGGAGGACTGGATGAACACATGGACAGGACAGGAGATCAAGTGAATTTGGACACTATTGTAGATGTATTTAATGTGCATCAGCTGAAACTCAGAGCCCAGCAAAATCCCGACAAGCCTGAAACCATCTATGCAATCATGTATGCTTTCATCACCACAATGAATCTTGACTCATCCCTTTCCAAATTAATACGAAACCGGTGTGCAAAGTGCAGATTCACAGTAAGTGAAGAAACACAGAGCTGCTCCAATGTGGCATGCCCAGGGTTAGGAGACTCTGCAGAGGTCATAACTGGCTTTGATTTACTGGTGGACCTCACTGATCACACAGGCACACTGCAGTCCTGTAACCTGTCCGGCACTGCTGCTGAAAAGACCCTGGGCTGTACTGTGCTTCTAACTCATAAAGCCAGGAGTGGTCTGAGAGTGAATGTCCTGTCTTGCACACTGGCTGACCCTGGGGAAGTGAGGCAGAGCTTACCCAGTTCAGGACTGTTAATGCAGAATTAGAGCCAAGCCCAGGCCAGCATGGGCAATATTACCTTtttaacatgttaaaaaaaagacccagatttgtatttcttttaactAAACTAACTGAAGAGGTGGCAAATTCTAACACCttaaatgtatgaatgcatATTCTTAACTGTCAGAAACAATAGATTGGAATTTACAAAATTGAGTTCATATGAATGTAAGACATTAATGTCTGAGAAAAGACTATGTTTAGTATATCTGTTTTAATCAGATATTGTGTATATTTGGTATGGTTTATTACATGATGTTATGCGACTTTTTATTATCAATAAACTTGAAAAAACGGAATGCTTGAATATTTgcctgaataaatacataatgtacttaagaaaacaaagtttacagatTACAATTAAATGCTGATCTGTGagaatttacaaatgtaaatagattTATATTTACACAACATTGCATGTGAGAAA

Function

GO: NA

KEGG:

id description
K22420 MEIOB; meiosis-specific with OB domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145839 lncRNA upstream 100794 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 100794 11252419 ~ 11256165 (+) True AMCG00018449
TU145745 lncRNA upstream 273170 11061569 ~ 11083789 (+) True G116374
TU145726 lncRNA upstream 377274 10977022 ~ 10979685 (+) True G116358
TU145722 lncRNA upstream 617784 10738286 ~ 10739175 (+) True G116354
TU145882 lncRNA downstream 40603 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 45279 11415481 ~ 11415738 (+) True G116479
TU145974 lncRNA downstream 358607 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 756248 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 768800 12139002 ~ 12140081 (+) False G116603
AMCG00018454 mRNA upstream 30191 11318171 ~ 11326768 (+) True AMCG00018454
AMCG00018453 mRNA upstream 60113 11296349 ~ 11296846 (+) True AMCG00018453
AMCG00018449 mRNA upstream 100865 11252359 ~ 11256094 (+) False AMCG00018449
AMCG00018442 mRNA upstream 147449 11203188 ~ 11209510 (+) True AMCG00018442
AMCG00018441 mRNA upstream 157517 11197116 ~ 11199442 (+) True AMCG00018441
AMCG00018450 mRNA downstream 1342 11371544 ~ 11377395 (+) True AMCG00018450
AMCG00018451 mRNA downstream 7697 11377899 ~ 11384556 (+) True AMCG00018451
AMCG00018456 mRNA downstream 31756 11401958 ~ 11408807 (+) True AMCG00018456
AMCG00018463 mRNA downstream 57481 11427683 ~ 11436200 (+) True AMCG00018463
AMCG00018465 mRNA downstream 80298 11450500 ~ 11452474 (+) True AMCG00018465
TU145312 other upstream 1744041 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1792555 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2115144 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2155373 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2662240 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 596045 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1145601 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1883141 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1937696 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2649726 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile