RNA id: AMCG00018463


Basic Information

Item Value
RNA id AMCG00018463
length 2340
RNA type mRNA
GC content 0.58
exon number 13
gene id AMCG00018463
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11427683 ~ 11436200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGagtggagaaaataataatacggCAGAAACAGTGGATGAGCAAACGGTAGCCGGCAACATCATCACCATCCACACCACACTCGGAGACGAAGaTGAGGATGTGCACAAGTGTGGCCGCTGCCAGGTGGAGTTCACCAGCCTGGAAGCTTTCATCCAACACAAACTCCAGAACAACTGCCAGAGGATCCAGGAGGTCCCAGGCTCTCAAGGGCCCAATGAGGAGCTGCATAGGTCCAGCCAGGAGGTAAAGACCCTGATTCCCTGCATTCAATTAAAACGCTACAAATATGAAGCGGGGGAGATGGGCACTGCTCATGGGGGGCGTCGGAGGCGAGGCAGTGCGGCCAGGGGCTCCCCAACCACTCAGGGCTCAGATAGCGGGCAGGAGAGCAGGTCAGAGGTCAACAAGGCGGCATACAGGCTGAATTCAGATGGGCGTTTCGTCTGTCCGCTCTGTGAGAAGACCTTTAAAACGGCCAACATTCTGAGAGCACACTTGACCACTCACAGTGAAAAGAAGAGCTTCCTGTGCAAGCTGTGTGGGAACGCCTTCCGGACCAAGGGCTCGCTGATTCGACACAACCGGCGACACACAGACGAGCGTCCCTACAGATGTAACCTCTGCGGCCTCTGCTTCAGGGAGTCGGGGGCGCTGACCCGGCATCTGAAGTCCATCACCCCCTGCACGGAGAAGATCCGCTTCAGCCAGTGCAAAGAGATCCTGGTCAATAAGGACGGCGTGCAGAAAGGTGAGTGTCCGGCAGTCCTCCGCACACCTGGGTCTGAGAGCCCCCCCAGGACTTTCTCCTCATCCCCTTTCccattatattttgcatatgttTTAGAAACAAGAAATAGTGCAGCCCCAAAGCTGCCGACAGCCCTCTCACCCCCTGGCACGCCCACAGAGGCACAGGTGTCCGTGGTGACTGTGGTACCCGGCTCCGAGGAGGACATTCTCCAGGAAGTCCACGTGCAGATGGAGGTGGACAGCTCTGAGGAGATGGAGTCTGCTGCTGAGGAGGAGCACCAGGTCGAAGAGCACACAGAGGGAGACAATCTGATCAGCCAGGCCATCATCAACTCGGGTATTGCACTGGAGGGCGACAGGGAGGAGGACGAAGGCGAGGATGAGGGCAAAGAGCCGGAGCTGCCTCTGCCTGCCCATGACACAGAGAACAGGATTGCGGAGATCCAGGTCCGAGAGGAGTGCGTAGAGGTGGACTCAGAGGACATCACTGAGCCTCTGGAGAGACATGGTGAGGAAAAGGGCCACAAATGTCCTCACTGCAACCGGGTCTTCAAAGCTCCAAACTACCTGCGGATACATGTGAAAGGACACTTGGGGTACAAGCCATTCAGGTGTGTGGTCTGCCAGAAGGACTTCCTCACAGGGTACCTGCTGAAGAAACACATGGAGGCCCATCTGAGCGAGCGGCGCTTCAAGTGCGGGGAGTGCGGAAAGCTGTACAAGACCATTGGCCATGTCCGGGAGCACATGAGAGCGCACTCTGATGACCGGCCCTATCGCTGCAACAAGTGCGACAAGGGCTACAAGACCAAGaACGCTCTGCAGGTGCATCAGCGGACTCACGGGGAGGAGAGGCCGTATGTGTGCCAGTTTTGCTCGCGGGGTTTCCGGGAGAAGGGCTCCCTTGTGCGCCACATCCGCCACCACACTGGAGAGAAGCCATTCAAGTGCTACAAGTGTGACCGGGGCTTTGCCGAGCATGGCACTCTGAACCGGCACCTGCGCGCCAAAGGGGGCTGTTTCGGGGGGCTGAAGGATGGGGAGCAGGCCGAGGAGACGGAGGACCAGGCTTCTGCAGACAGTGTGGCCGCCACCATCATCTCGGAGGACCCCCACGCCGTGCTGGTCGAGTTTTCCTCTGTGGTGGCGGACACACAGGAGTACATCATTGAGGCACCGTCAGAAACAGCTGAGTCGGGAGGAGAAGTAGCACTGATGCAGGATGACAGAAATGAGGTGGGCAGCCACATCATGAAGGTGGTCCAGCAGATTGTGAACCAGTCCCACGCGGGCCACCAGATCATCGTGCAGAACGTTACCATGGATGAGGCCGCCGCGCTCTCCTCCGACTGCGGCGACACGATCACCATTGCGACGCCCGAGAGCCTTACAGAGCAGGTCGCCATGACGCTCGCCTCCGCCATCAGTGACGGCACCATTCTGACCACGGAGGGTGGGCTGGAGACGGGAGATGGCACGGTCACGATGGTAGCGGCCCGGGACATCGAGGTGATGGAGCAGGCGGAAGAGTTTGTCATTACCTCCCCAGAGGAGGTGGAGATCCAGACTGTGATCGTACAGGACTGA

Function

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG:

id description
K22401 E4F1; transcription factor E4F1 / E3 ubiquitin-protein ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145884 lncRNA upstream 11945 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 15613 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 171518 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 171518 11252419 ~ 11256165 (+) True AMCG00018449
TU145745 lncRNA upstream 343894 11061569 ~ 11083789 (+) True G116374
TU145974 lncRNA downstream 292609 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 690250 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 702802 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 702802 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 836389 12272589 ~ 12273496 (+) True G116653
AMCG00018456 mRNA upstream 18876 11401958 ~ 11408807 (+) True AMCG00018456
AMCG00018451 mRNA upstream 43127 11377899 ~ 11384556 (+) True AMCG00018451
AMCG00018450 mRNA upstream 50288 11371544 ~ 11377395 (+) True AMCG00018450
AMCG00018452 mRNA upstream 57481 11356959 ~ 11370202 (+) True AMCG00018452
AMCG00018454 mRNA upstream 100915 11318171 ~ 11326768 (+) True AMCG00018454
AMCG00018465 mRNA downstream 14300 11450500 ~ 11452474 (+) True AMCG00018465
AMCG00018462 mRNA downstream 51947 11488147 ~ 11514342 (+) True AMCG00018462
AMCG00018464 mRNA downstream 79755 11515955 ~ 11526795 (+) True AMCG00018464
AMCG00018468 mRNA downstream 159721 11595921 ~ 11606352 (+) True AMCG00018468
AMCG00018467 mRNA downstream 183173 11619373 ~ 11638050 (+) True AMCG00018467
TU145312 other upstream 1814765 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1863279 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2185868 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2226097 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2732964 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 530047 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1079603 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1817143 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1871698 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2583728 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile