RNA id: AMCG00018464


Basic Information

Item Value
RNA id AMCG00018464
length 3327
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00018464
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11515955 ~ 11526795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGGCTATCTGCCTGCAGAAGAGGCCCAGTCTTCTGCAAGCTGCCAGGTGCTCCCCGCAGGAGGGGCTCAGTCTCCCGTGGGCGCCTTACCTCTTAACACCATGGACACAACACAGGCCTACAACACCTCCTCTCCTGGGTCTCCCGGGCCCACCCGCTCACACTCCCTGGCCGTCACAGACATCGTAGTGCTGGTGCTGTACTTCCTGTTTGTCCTGGCTGTGGGGCTCTGGTCCATGTGGAAGACAAAGAGAAGTACAGTGAATGGGTACTTTCTAGCTGGGAAAAGCATGGTTTGGTGGCCAGTGGGGGCCTCTTTGTTTGCTAGTAATGTTGGGAGTGGGCATTTCATAGGCCTGGCAGGATCAGGGGCTGCATCGGGCATCGCAGTAACCGCCTACGAGTGGAATGGCATGTTTATTGTCCTGCTTCTGGCCTGGATGTTCCTGCCCATTTACATCGCCTCTGGGGTGGACATGTACGCAGGAGCGGTGTTTATCCAGCAGGCCCTGCAGTGGGATCTGTACCTGGCCGTGGTGGTGCTCCTCTTCATAACAGCTCTATACACAGTGGCAGGTGGCCTGGCTGCAGTCATCTACACTGACGCCCTGCAGACTGTCATCATGCTGATCGGGGCGCTGATCCTGATGGCCTTCAGTTTTACAAAGGTGGGGGGCTGGGAGGGGCTGCATGACAGGTACGCGGACGCCATCCCAGCTGTCCGAGTCCCAAACAGTAGTTGTGGGCTGCCCCGGGAGGACGCTTTCCACCTGTTCCGTGAccctgtgacctctgacctgccCTGGCCTGGAATCCTACTGGGGATGACCATTCCATCCATTTGGTACTGGTGCACAGACCAGGTGATCGTCCAGAGGTCTCTGGCAGCCAAGAACCTGTTGCACGCCAAGGGGGGCTCCCTGTTCGCCTCCTACCTGAAGGTGCTGCCTTTCTTCATGATGGTTTTGCCAGGGATGATCAGTAGGATCCTCTTCCCAGACGAAGTGGCGTGTGGGGATCCAGAGGTGTGCCAAGAGGTGTGTGGAAATCCCATGGGCTGTTCTGACATTGCGTACCCCAAACTAGTGATGGAGCTACTACCCTCAGGGCTGCGTGGGCTAATGATGGCGGTAATGATCGCCGCTCTGATGTCCTCCCTCACCTCCATCTTCAATAGCTCCAGCACCATCTTCACCATGGACCTGTGGAGACACTTGCGCCCCCTAGCCACTGAGTGGGAGCTCATGGTTGTAGGCAGagtGTTCGTCCTGGCACTGGTagcagtgtcagtgctgtggaTCCCGCTGGTTCAGGCCAGTCAGGGAGGGCAGCTGTTCATCTATATCCAGTCCATTAGCTCCTACCTGCAGCCTCCAGTCGCTGTCGTCTTCATTGCTGGCTGCTTCTGGAGGAGGACCAACGAGAAGGGTGCATTCTGGGGCCTGCTGCTGGGACTGCTGGTCGGCTGCGTCAGGATGGTCCTGGACTTCATATTCCCGGTCCCACAGTGCTTTGACCCAGACATGCGACCCGACATCATCAAGAACATACACTACCTGTATTTCTCCATCATCCTGTCGGTCTTCACTCTGGCTGTGGTCGTGGTTGTCAGCCTGGCCACCAAGGAGCTCCCACAGTCAAACATCAGCCGCCTCACTTGGTTTACACGGTTTGACCCAGCCGAACCGCACAAAGTGGAAATCTGCATGTCGCCCAGTGATacaggggctgctgggagagACGAGGAAGGCAGTGGAGGGGAGGAAAGGCTGAGAAACGGAGAGAGGCACCAGCAGAGGAAAGGTTCCTTCTCCACAGAGGCCAGCGAGAAAAAGGACTCCAAGCTGAAGTCGGTCATTCTGTGGGTGTGCGGGATGGAACGTCGTAAGGAAGGCACTGGCGTCGCCCCACTCCCCCCTGAGGTCACTGTGTGCTCGCTGGAGGAGGAACCCTGGCTGAAACACGTGCTCAACGTCAATCTCAtcgtgtgcatgtgtgctgcGGTTTTCCTGTTCGGGTACTTTGCCTAACAGGGCAGACCCCCCGCTCCCCACCCCCCGCCGGAAAAATCCACCGGATGGATGCTTTGTAGAGAAGCTGGACGTGTGAAAACCTTTAACAGTGTTACCGTGCCGCCACCATGGTGAACGATCATTGGAATTGCAGTGTCTCAGCAGTAGAGCCACATAAGTGTTAAGTGTGAGGCAATCCTGTTCTTAAAAAAGACTGAGCAAACAGACCAGGAAACTTGTCCTCTCCTTGTGAAATGTGACCCTGGGGAATTCTGGGACTGTCAAGAGCAGTGCACCACCTTAATCAAAGTTCACGTCAGGGTTCCAGGCTAACTGCAGTGCAAGAACAGCAATGGCTGACTTCTGCAGTAACCCCTCCATAAACTGAAATCATCAGGATCTTGgtcacaattgtatttttcttatataaAGCAGATGGtgcccagccctggtcctgcagcaCTCCCTGTGTCGGCTGCTTTTCCTTCCAGCCCTGTTGTCAGTTACTGCCCTGAGCCATCTCCACCTGTTTAAGCAGTGAAAACTATGGACAAGGTTGAAAACATTACTTCAGCTAAAAGTCCTATCAGGAGCTCGAACTACAAGCAGCAGACAAAGGGATCCCTCCATGAGCAGGGTTGGGAATAACTGAGATGAAGGGTGGGTGTGATATAAGAtgactgtttgtttgtgttttataaaatgaCTTTATTAGTTGCTAAGTGGACTGCTGGAAACCACTGACGTTCctgacaataaaaataaatacttacctTAATTGTCACCTTTCACCTTCCTGGAAAACTGCTCAAAGCCagtaaagatttaaaataaatatttcagttttaaaaagaaagtggtCAGAGCCAGAGTTTGAACTGGGCATGGCCAGTGTGGAGCAGCCTGGACAAAACTATGGTTTATCATTTTTTACTAATAATGAATGTTGGCTTCAGTACCCACAgacaacatttaaacaaacaaaaaaatactttaatagcAGCATCTTTTTTTGACACGATGCATATGACAAGCAGTCTTAGAATGTAATCATCAAATGAGTTATATAATTTAGAGATGAGTTCAATGCTTTAGATCAACAATTATATTTCTGATAAAgattttttctatattttttaaaatcacaaatacagTTGATGATTTCAAAACatgaattgaaataaaacaatgcacacCAAGTCCttccaataataattatttatatcaaaaacattattgttgttgaaaaCAATCGCTTCAAGAACAGAACTGTTGGAATAAAAAATAGcagtttaaatcaaaatatctgGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14391 SLC5A11, SMIT2, SGLT6; solute carrier family 5 (sodium/myo-inositol cotransporter), member 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145884 lncRNA upstream 100217 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 103885 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 259790 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 259790 11252419 ~ 11256165 (+) True AMCG00018449
TU145745 lncRNA upstream 432166 11061569 ~ 11083789 (+) True G116374
TU145974 lncRNA downstream 202014 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 599655 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 612207 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 612207 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 745794 12272589 ~ 12273496 (+) True G116653
AMCG00018462 mRNA upstream 1613 11488147 ~ 11514342 (+) True AMCG00018462
AMCG00018465 mRNA upstream 63481 11450500 ~ 11452474 (+) True AMCG00018465
AMCG00018463 mRNA upstream 79755 11427683 ~ 11436200 (+) True AMCG00018463
AMCG00018456 mRNA upstream 107148 11401958 ~ 11408807 (+) True AMCG00018456
AMCG00018451 mRNA upstream 131399 11377899 ~ 11384556 (+) True AMCG00018451
AMCG00018468 mRNA downstream 69126 11595921 ~ 11606352 (+) True AMCG00018468
AMCG00018467 mRNA downstream 92578 11619373 ~ 11638050 (+) True AMCG00018467
AMCG00018470 mRNA downstream 150967 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018469 mRNA downstream 229039 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018471 mRNA downstream 328725 11855520 ~ 11900247 (+) True AMCG00018471
TU145312 other upstream 1903037 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1951551 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2274140 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2314369 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2821236 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 439452 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 989008 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1726548 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1781103 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2493133 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051211 True 2405 mRNA 0.48 16 NC_007114.7 18655673 ~ 18675688 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_04870434_04878415.mRNA True 1978 mRNA 0.51 14 CI01000034 4870361 ~ 4878415 (-)