RNA id: AMCG00018468



Basic Information


Item Value
RNA id AMCG00018468
length 1329
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00018468
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11595921 ~ 11606352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCACCCGAAAGGCTTTCACAGACTCCGACACGGCCGACGAAGCAGTTCGTACTACATGCGATGATGCCTCAGTCTGGTACTATGCCCGAGTGAGGGGCGTGAGTCACCTGCTGGATGCCTTCCTCCGACAGATGGCTTGCAACTGTCAGGACGAAAATCTCCTGcctaaaaaatactttgaagtTGACTTCCCGATGATCGTGGCGAGGAAGATCCACAATATCAAGACGAAACCTCCTTTGTCGAAACCCATTGTGGAAACCCACTCTACTGATGCCCTTCTGATTGatgGCCACAGTCTGGACTCGGACAGGTACTGCATCATCGGCGCAGATCTGCGGGACCTCCCAGGCCTGGAGGAGAAGCTCAAAGCCTTCCAGCTGAAGCCCGAGCTGCCGACGCTGTTAGTCTCCGAGTGTGTGCTGGTGTACATGACCCCAGAGCAGTCTGCCACCCTGGCACGGTGGGCCGCCAACACCTTCCCCACTGCCATGTTCATCAACTATGAGCAGGTGAATATGGCAGACCGTTTTGGACAGGTGATGATCGAGAACTTGCAGCGGAGGCAGTGTAATCTGGCTGGAGTGGAGGTGTGCCGATCCCTGGACTCACAGAAAGACCGGTTCCTGACCACTGGTTGGGAGCGTGCGGATGCTCTGGACATGATGGCGGTGTATAGCGCCCTTCCCCAAGACGACGTGGCGAGGATCGAGCAGCTTGAGTTCCTGGATGAGAGGGAGCTTCTGCAACAGCTACTGCAACACTACAGCATCTGTTGGGCCACCAAAGATCAGCTCAAACTGGgTCTGTctggtgtttcattttaaacaaccAAGGGGGGGAAATTGACAGTTTTTACATGTGTCCCAGATAAACCACTCAACATGCTCCTTCATGCCATAAAATCCTGCGCTTGCTAATAGACCAGGACAATCCAGCCTCCTGCATTGTGGCCACTTTTGTCCACTGTGGTCCTTCTCCAATAAAACACCAGGAAAACATGAATTTTactctgattttaattttggtttttAGGGTTTTTCGCCCCCAGAATGAGTGCTATAGTACTGCTGATCAGCTCATATGTTAAaagtattgtgtattttatataaaaagcatGACCGTGTTTCTCCCTACACTGAGGTTTGTCTTCAGATGTGGAGTCATTAAAGGTCAAATCCACACTtatacatacaccaatcagccataacatgatgaccacctgcctaatattgtgtaggtcccccttttgcagccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtgctctctggca

Function


GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K18203 LCMT1; [phosphatase 2A protein]-leucine-carboxy methyltransferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145884 lncRNA upstream 180183 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 183851 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 339756 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 339756 11252419 ~ 11256165 (+) True AMCG00018449
TU145745 lncRNA upstream 512132 11061569 ~ 11083789 (+) True G116374
TU145974 lncRNA downstream 122457 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 520098 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 532650 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 532650 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 666237 12272589 ~ 12273496 (+) True G116653
AMCG00018464 mRNA upstream 69126 11515955 ~ 11526795 (+) True AMCG00018464
AMCG00018462 mRNA upstream 81579 11488147 ~ 11514342 (+) True AMCG00018462
AMCG00018465 mRNA upstream 143447 11450500 ~ 11452474 (+) True AMCG00018465
AMCG00018463 mRNA upstream 159721 11427683 ~ 11436200 (+) True AMCG00018463
AMCG00018456 mRNA upstream 187114 11401958 ~ 11408807 (+) True AMCG00018456
AMCG00018467 mRNA downstream 13021 11619373 ~ 11638050 (+) True AMCG00018467
AMCG00018470 mRNA downstream 71410 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018469 mRNA downstream 149482 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018471 mRNA downstream 249168 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018476 mRNA downstream 349877 11956229 ~ 11966330 (+) True AMCG00018476
TU145312 other upstream 1983003 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2031517 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2354106 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2394335 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2901202 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 359895 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 909451 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1646991 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1701546 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2413576 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile