RNA id: AMCG00018475


Basic Information

Item Value
RNA id AMCG00018475
length 4977
RNA type mRNA
GC content 0.58
exon number 14
gene id AMCG00018475
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11967889 ~ 11987054 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGGCGGCTTGCTTGTGATCGTACCGAACCTTCAAGTGGATCTTCAAAAGCaTTACATGAAGAAACTCGTAGGACCTCCCCCACCCAACTACACGTGCTTCCGCTGTGGAAAGAATGGACACTACATTAAAAACTGCCCAACCAATGGGGCATATGCAATTGGGAAGAAGGAGAAGCCCCCATTCCTCCCGCAGGAGCAGTCTTCGTCATCTGAAGAGGAGGACCCGGTGCCAGACGAGCTGCTCTGTCTGCTCTGTAAGGACCTGATGACGGACGCCGTGGTCATCCCCTGCTGCGGGAACAGTTACTGTGATGATTGTATTAGGACATTTCTCCTGGAGTCAGACGAGCACGTGTGTCCTACCTGCCATCAGTCTGATGTTTCCCCCGATGCCCTGATTGCAAACAAGTTCCTTCGCCAGGCTGTCAATAACTTCAAGAACGAGACTGGCTACACCAAGCGGCTGCGTAAGGGTCAAGCCCAGGTGGCTACTCCGATCATGCCAACCCAGCCAAGGCCGGTGGTGCAGCGCCCGGTTCAGCTGCCGCTCCGCCCACCTGCCTCCAGGCAGCAGGACCCCCTTATGGCCAATGTCGCTCGACCGGTTCCAGctgcctcctctcctcctgtGGTGCCAGCCCCGATACCACCTCCAGTAACCCAGCAGCCTTCAGCCACCACCTCTTCTGCCCCTGCCAGCACTGCTGCCACCCCCTCTCTTCAGGTCAACCAAGTCAGTAGTGGGGCCGTCCCAGCTGAGGTCTCCACCTCCATGCCCTCCCCTCAACCCCTCATGAAGCAGGAAGAGGTGATCGTGCCTAAAGAGCTAGAGAAGGTGGTCGTCACCTCTGCCCCACCATCTCTTATGGCTTCATCGGATGCgtctctgcctcctcctcctctcatgCCTAAAGGATATCACGTGCCTGTGATTGGCCAGCCTCACTCCCTTGGGCACTCCATTCCCACAACAGGACAACCATTGCGATCCAACCCACCCCGACCTGGAGGCAGTAGACCAGTCTGGGATACGCCTCCTGGCAGAGGCAGGCCACACAACGACCGTCCTCCCCGGGTTCCGCCGGTGGCTGCCACTGCAACACTCCCTACGGCAGCCCAGGTGTATGTGCCACCTCCCTTCCCCCCGCCACCCCACGTGATGCCTCAGCCGCCTGGAGTTGCCCCACAGCAGTTCTCAATGCAGTACAACGCCGGGCAGCCACCTCCGGCTGGCTACCCTGTGCCCCCGCCGGTGTACCCCCCAGTTCCTGCGACGGTGCCTGCCACCTGGGTGCCTCCTGGAAACCCGACGGCAATCACCAGCACCATCCCCTCCCTCACACCCACGCCCTTCCTCTCTAAGGAGGAGTTCTACCGGCAGCAGCGCAGACTGAAAGAGGAGGAGAAGTCCAAGCTTGAGGAGTTTACTAATGACTTTGCCAAAGAGCTACTGGAGTACAGAAAGATGCAAAAGGAAAGGAGGCGATCATACTCCAGATCCAAATCTCCATACAGTGGCTCATCCTACAGTGGAAGCTCCTACTCCTACTCCAAATCCCGGTCTCGGTCTCGCTCCTCCCGCTCCTACTCCCGCTCCATGACCCGCACCCGCTCACGCTCGCGGTCCCGGTCGCGCTCGCGCTCCTACTCCCGCTCACCCGTGTACTCCCGCCGCCCGGCCCGGGGCCGCAGTCGCAGCTACCGGTCTAGATCACGCTCCCACGGCTACCACCGGTCCCGCACACGCTCTCCCGCCTACAGGGTTGGGGGAagtggtggaggggggggtgccAGTGGTGGGTACCGGTCCCGCTCCAGATCCCCTGGGGGTTACAGGGGTCACACCCCCAGCAAGAAGCCAGCTCCACCCCCACAGGCTGAAGGAGACCGAAAATACATGGGTCGATACAGAGAGCCCCCTGCCTATGATGCCAAGGCTGTGTATGGCCGTCCTGTGGACCAGAGAGACCCTTTCGAGAGGGATAGATACcgggagtgggagagggagtaCCGTGAGTGGTATGACAAATACTTTAAGAACTACAACAACCCTCCAGGCAACATACCCAGGGTGCGTGCCCCCCAACCCAACCGAGAGCCCTTCACACCAGAACGGTTCGCCCCACCCAGGCCCAGGGACAACTCGCCGTACAGCCGTGGTCGTAGAGAGGAGTACCCCCCTCCTGGTCAGAGTCACGGCCCCCTGCAGAGGGGCCGCAATATGCCCCTTACTTACCAAGAGAAGTTCGCATTTAAAGAAGCGCACAACCTGATTGGTGCCAACGCAGGGCCTGGCAGAGGATGTAGCAAAGAGCCTCGCAAAGCGTCAAAGGAGAAAGAGACCGCTGTCAACTTGGCAGCAGATTCCAAAGGcctgaaacacaaaaaacataggAAGAAGAGGAAAGGTGAGGAGGGGGACCTGTTTTCCCACTCGGAGCCCCTGGAGGGCACCAGGAAGGCTGGGGATGATGGGAAAGAGTCCATTCTGATGCCCCCAAGTCGAGATGACGCCACGCCTGTCAGAGATGAGCCCATGGACAGCTCCTCTCTTTCTTACAAGTCCTCCTCTGACAAGGACAGGAGGGAGAAGGCCAAAGGAAAAAGTGAGAAATTGAAGCGTAAGCCGGAAACTACCACCGTTAAAAAAGAGTCTTCAGTTAAAGTGACTAAATCATCCAGAGAGAAGCCAGCAGAGACCGACCGTGAAAAATCACCCCGTTTGGAGCCTGCAGCCAAAAAGGCTAAGGAGGAATCATCTCAGAAGGCAGAGCCCTCCAAACAGCACACGTCCCAGCGAGATGACAAGGCCCCCCGCAGGCCGGCCCCAAAACCAACCAAACACCATCAGGAGACCAAAGCTGTAAAAGAGGAGGTGAAGCAGAAAAAAGAGTATGTCAAGGAGACTACCAAGCACGACAAGGCCCCTGCCAAGGAGGAGAAGCCCAAGAGAGACACTGAGAAGACTACCAAGCCTGAGGACAAACCCCCCAGCAAGGTCCCGGAGGTCAAGCCCGAGAAGCGGAAAAGGAAAGACGAGAAGAGTGCTGAAAAAGACCAGAGCGCGCTCTCGATAAAGTCCCCCCGGGCGGATGTGGCAGAGGTGGTGAAACAGTCTCCGAGGCCTAAGCCTGAGCCTGAGCCCGAGAAGCAGCCCGAGAAAGAGAAACCCGTCATCAGGCCCCTGATGGAGAAAGAGGAGAAGCCCGCCCCCTCCAGAAAGATCAAAATCAACCGCGAGATGGGGAAGAAGATCGTGAGTGGCGAGGGCGTGGTGCCAGTGGAGGAGCCTGCCGAGCCGGCGGGGAAGGCCAAGCCCGAGAGGGTGAAAACCAAGGTCCGCAGGAAAGTCCAGTCAGCGGATGGAACTGCCTCCCTGTTGGTGGATTACACCAGCACGAGTTCCACCGGTGGCAGCCCCATTAAGAAGCTGGACGAGAAGATCGATATGAAGAAGACGGTTGTGAAGACCCTGGAGGAGTACACCAATGACAGCTCGACCCCCGCGGAGGATGAGATCGTCATGATCCAGGTCCCCCGCTCAAAGTGGGAGAAGGAGGACTACGAATCGGAGGACGAGGAGGCCAAGGCGTCTGCGCCCACTGCAGAGCCGGAGTCTGCTGCTCAAGCCAGCCCTGCTGCTCCTGTTACTGTGAAGGACGTGGCCGTGAAGCCGCCCACCACTGTGAAGCCGGCCGATAAGGACTCGCCACAGCTCGACAAGGCCCCCCAGCCCACTAAAGAGACTGCAATCCCTGAGCCCCAGCCTGAGCACAAACCTGCAAAGACCTCAACCGTGTCtgacaaagaaaaggaaaaggagcgGGATAAGGacaaggagaaagagaaagagagggatcGAGAGAGGGCAAAGGAGAAAGAGCGCAGTGCTTCAGACAGAGAGGCGGTAGAGAAGAGGAAGCCTCCCGCCATCCATCCGGAGAAAGAGAGGATCCCGGAGCGTAGCAGTGAACACGGCAGCGAGAAGAGCACTTCCTCTGCCTCGAACGCCTCTACGAAAGACCGGACTTCCGACAAATCCGACACCGTCGCTCGGAAGCCAGCCAGCAAGGATGGCGGGGTAGTTTCCGACAGAAAGCCGGAGCACCCAGCAACGTCCAGAGACCATTCCGGCACCAAACGCAAGGACGATAAGTCCCGAGACCACTCCAAGAGGAGAGACTCTCCGGGCCTTTCCAAGGACCACGCCCAGCCTCCAAAGAGCCGAGACCGGGATAAAGGAGGGTCTGAGCCCAAGAGGCCAGAGCATAGTCCTGCCAGGGACAAGCGCCCTCACTCTGAGCACAAGAGTGCTTCCGAACCCAAGAGAGCTGCACTGGAGGACCACAGGACCGACCGTCCGTCCACTAAGGACTTGATCCGCCCGGACACGAGAGGCACGAAGGACCGGGGTGAGCACAACACTCACAAGCCGCCCCACAGGCCAGCATCCCCAGATGTTAGGAAAGAGGGCGAGAGGGTGGCAGGCCGAGGGGAGCGCGATCACAACAAGAGCAAGACCCCCCTGGTGCGTTCTACTCGTCTCTCTTCAGACCTGGCCCGGGAGACGGACGAGGCGGCCTTCGTCCCGGACTACAGTGAGAGCGAGAGCGACAGCGATGTCTCGGAGCCCAACAGCAAGGCAGAGCAGCGGGTCAGGGAGAAGGGAGCCGACAGCAGCCCCAGCGCCAGCCACAGCCGCAGCCAGAGCCCCTCCGGCAGCCAGGCGCGCAGCAGCAGTGCCAGCTCGGGTGGCAGCCAGGacagcaagaaaaagaaaaagaataagaagGATAAGAAGAAGCACAAGAAGCAtaagaaacacaagaaacacaagaagcatgcGGCCAATGAGTCTGACTCTGAGATGAAGggacaaaaacacaagcataaGAAAAAGAAGTCCAAAAAGAGCAAGGACAAGGAGAAGGACAAAGAGAAGGATGACCAAAAACCTAAAGTGACTATTTGA

Function

GO: NA

KEGG:

id description
K10624 RBBP6; E3 ubiquitin-protein ligase RBBP6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145974 lncRNA upstream 149800 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 552151 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 555819 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 711724 11252419 ~ 11256165 (+) False AMCG00018449
TU146048 lncRNA downstream 139396 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 151948 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 151948 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 285535 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 291376 12278430 ~ 12278840 (+) True G116654
AMCG00018476 mRNA upstream 1559 11956229 ~ 11966330 (+) True AMCG00018476
AMCG00018471 mRNA upstream 67642 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018469 mRNA upstream 150841 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018470 mRNA upstream 289762 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018467 mRNA upstream 329839 11619373 ~ 11638050 (+) True AMCG00018467
AMCG00018478 mRNA downstream 86051 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018477 mRNA downstream 164335 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018481 mRNA downstream 199636 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018482 mRNA downstream 208488 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018483 mRNA downstream 247957 12235011 ~ 12270627 (+) True AMCG00018483
TU145312 other upstream 2354971 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2403485 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2726074 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2766303 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 3273170 8693364 ~ 8694719 (+) True G115789
TU146176 other downstream 528749 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1266289 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1320844 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2032874 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 2059205 14046259 ~ 14049153 (+) True G117033

Expression Profile