RNA id: AMCG00018476



Basic Information


Item Value
RNA id AMCG00018476
length 807
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00018476
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11956229 ~ 11966330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTTCACAGTTGAACAGCACCTGGCACAACTCCTTCAGCCTCCCCTCTAACAACATTGAGACAAGCAGGTCTCGCACTGCCCTGCCACCCAGCACTTCCTGCAGACACATGACTAGACAGGGAAAAGAGGAGGACAACAGTGGGAGGGCGGAGGGGGTCAATGCCATTCACAGCCAGATCAGGGGTGGGCCCGGCAgcgaagaggaggaggaggatgaagggCCTTGTGACAAAGCCAGCACTTCATCGCAGCAGCGCAGCACCAGCTGGTACTCCCGCCGGCTGAGGACAGAACTGTGCTTCACTGGCACGCGCCTGGCTAGCAGGGGGATGGATGTTGAGGCGCCGCGAACAGCGAGCCGTGCATGCTCCATACCGCCAGCTAATCGCCCCCCAAGCCCTCCCCAGCTCACCCCGGACAGCAGCCCTCGGGAGACGGGCTTTCAGTTGCATCCGAAAAGCCATAAATACACAGCGAAACTTTGCAAGCGCAACCCACCTCAGCTCTCGGCAACGCCATCTTGGAATCGGGGAGAGGTCGAGTTCACACAAATCTCCATTCTGGGTGACGTCACAGAGCGAGGAGCACCTGTTTGGGGATAtactggggggaggggggacagGCTACTAACATGTGACCTAGCCAACACGTCGCGACGCACGACAGTTCATAACGTCGCGGTACGTGCCCCCTGCGTTTACTCCTGGAAACCCCTGAGTGGCCGGAGGCGCCGCCATAGTGGTACAGAGAGGAGCGGAAAGCTGGAAGACGTTTCTTCGCACAGAGACGGACGGCAGATGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145974 lncRNA upstream 138140 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 540491 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 544159 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 700064 11252419 ~ 11256165 (+) False AMCG00018449
TU146048 lncRNA downstream 160120 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 172672 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 172672 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 306259 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 312100 12278430 ~ 12278840 (+) True G116654
AMCG00018471 mRNA upstream 55982 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018469 mRNA upstream 139181 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018470 mRNA upstream 278102 11677762 ~ 11678127 (+) True AMCG00018470
AMCG00018467 mRNA upstream 318179 11619373 ~ 11638050 (+) True AMCG00018467
AMCG00018468 mRNA upstream 349877 11595921 ~ 11606352 (+) True AMCG00018468
AMCG00018475 mRNA downstream 1559 11967889 ~ 11987054 (+) True AMCG00018475
AMCG00018478 mRNA downstream 106775 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018477 mRNA downstream 185059 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018481 mRNA downstream 220360 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018482 mRNA downstream 229212 12195542 ~ 12202096 (+) True AMCG00018482
TU145312 other upstream 2343311 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2391825 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2714414 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2754643 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 3261510 8693364 ~ 8694719 (+) True G115789
TU146176 other downstream 549473 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1287013 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1341568 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2053598 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 2079929 14046259 ~ 14049153 (+) True G117033

Expression Profile