RNA id: TCONS_00010742


Basic Information

Item Value
RNA id TCONS_00010742
length 849
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_004735
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25502406 ~ 25504380 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttggtacagcatattatttgcagtaaataattgaactgaacaatTCTGCCTCATTGTTAGatcctgtgtgtttgttttcatcatgTGACCCTCCCCATGTGCTCTTTTGTTCTAGTTCCCGCCATTAGTTAATGTTCATCTGTTCCACCTGTTTTTTTGCCCCTGTGTGTGATcagttcatcatcatcatcatcctctgtATTTATATCCCTTACTTTGGTTTAGTCATTGTCCGGTATTTTCTACGTTGATGCTAGCAGAGCACTGTCGTCTGAAGATAGTCCCCGGGGCAATCTCGCCGCCTGTGTGAAGTGGACACTGGCGAGGAATCGATCATCGTTCGTCAACTGTGCGGAGGAAGAACTCATCAGTGCCACTCCTTACCCAGTGACCAACCCAACAAACATCTGCTGGGAGTGTGTGCCAGAGCCCATCGCAGACGGAAAGCCACCCGCGATATGTGACCCATCGCCATCAAGAGCGTCAGAGAGGAACATTACCGAGCAGGAGGAGCTCAACCAGCCGGCCTCAGCTCTCCGACCCAACGGCTCAACGTTAGCTCTCTTCTCATCTCCTCCATGGACCGTCAGCCCACCAGCTCCACCTGGCTTACTTCTTCCCTCTTCTCCGTCTTGGTCAGTTGTCACTCTGCCTCCACCTCTGGACTTTGCTCCTCCGGTTGCGCCTCATTCCTCCATCCTGCACCGTTAAGCTCCTCCTTCCCTCAAGCTACGCCTCGGTCCTCTGTTGCTCTGGCTTCGCCGCGGGTTTCCAGACCTGTGTCGTCGCTTGGTCGTGTGAGCCTTCCACTCCACCTCGGCCCTCCGGGACCTCAATGTCACTTACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009377 lncRNA upstream 29200 25432626 ~ 25473206 (+) False XLOC_004734
TCONS_00010938 lncRNA upstream 72035 25380089 ~ 25430371 (+) False XLOC_004733
TCONS_00009376 lncRNA upstream 81685 25312018 ~ 25420721 (+) False XLOC_004733
TCONS_00010939 lncRNA upstream 93886 25380168 ~ 25408520 (+) False XLOC_004733
TCONS_00010741 lncRNA upstream 112815 25382277 ~ 25389591 (+) True XLOC_004733
TCONS_00010940 lncRNA downstream 984973 26489353 ~ 26491973 (+) True XLOC_004744
TCONS_00010942 lncRNA downstream 1085264 26589644 ~ 26593298 (+) False XLOC_004748
TCONS_00010941 lncRNA downstream 1085264 26589644 ~ 26593298 (+) True XLOC_004748
TCONS_00010943 lncRNA downstream 1133747 26638127 ~ 26725781 (+) False XLOC_004750
TCONS_00010743 lncRNA downstream 1187439 26691819 ~ 26692051 (+) True XLOC_004751
TCONS_00009379 mRNA upstream 15162 25467560 ~ 25487244 (+) False XLOC_004734
TCONS_00009378 mRNA upstream 17097 25432627 ~ 25485309 (+) False XLOC_004734
TCONS_00009375 mRNA upstream 217896 25223873 ~ 25284510 (+) True XLOC_004732
TCONS_00009374 mRNA upstream 235275 25223873 ~ 25267131 (+) False XLOC_004732
TCONS_00009373 mRNA upstream 235277 25223843 ~ 25267129 (+) False XLOC_004732
TCONS_00009381 mRNA downstream 96305 25600685 ~ 25603341 (+) True XLOC_004736
TCONS_00009382 mRNA downstream 136100 25640480 ~ 25770232 (+) True XLOC_004737
TCONS_00009384 mRNA downstream 271354 25775734 ~ 25830268 (+) False XLOC_004739
TCONS_00009385 mRNA downstream 271434 25775814 ~ 25829018 (+) True XLOC_004739
TCONS_00009386 mRNA downstream 341114 25845494 ~ 25881944 (+) True XLOC_004740
TCONS_00009380 other upstream 24500 25468312 ~ 25477906 (+) True XLOC_004734
TCONS_00009372 other upstream 250619 25223799 ~ 25251787 (+) False XLOC_004732
TCONS_00009364 other upstream 936814 24565478 ~ 24565592 (+) True XLOC_004724
TCONS_00009361 other upstream 1084066 24418224 ~ 24418340 (+) True XLOC_004723
TCONS_00009355 other upstream 1156913 24342331 ~ 24345493 (+) False XLOC_004722
TCONS_00009383 other downstream 143747 25648127 ~ 25648243 (+) True XLOC_004738
TCONS_00009419 other downstream 1630489 27134869 ~ 27134967 (+) True XLOC_004762
TCONS_00009421 other downstream 1652563 27156943 ~ 27163064 (+) False XLOC_004764
TCONS_00009426 other downstream 1714613 27218993 ~ 27220589 (+) True XLOC_004765
TCONS_00009428 other downstream 1726915 27231295 ~ 27234421 (+) False XLOC_004766

Expression Profile

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