RNA id: TU146176


Basic Information

Item Value
RNA id TU146176
length 4056
RNA type TUCP
GC content 0.42
exon number 2
gene id AMCG00018491
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12503023 ~ 12520331 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgtccTTAATGGCAGTGTAAATTTAAGATTACTCAATTTATTAATCAGCCAGGTGGTCTGagaaatagattaaaataaaaggccacaattaaacatttatccCAGGCTTGTCACTTTAAACTCTTCCACTGCTGTAACCAAAAAGGGAGACAAAATTGATCTCCCTCTCCTGCCACATAAAATGATGTGAGCACCAGGTAGCTTTAGGATCCACATttcatttagaagaaaaaaaatgtttactaatgcaaaattattattgaaCAGCCACTCTTCGGCTCAGATTGCACAATATTATCGTGCTTAAGCAAAACAATTAGTTGTGACCATAATTTCTGCACTTCTGAAGAGTCATTATTGAATAGGAGCAAGCCTAGTTGGGTCGGTTTTAAATGgagatttgaaatgcattaaaactaaACTGCTGAACACACGGTTTGATTACACAGAAGGAAAGctagataaatagataaaatgcGATTctccactttcctgctctaaacGCACACAAGGTGTTGTTGTTTATAACacttgtgcaaaaaaaaaaaagtgttatataaCTCAGACATCAACAAAACTGAGACTTCCTGAACATACCAGAGAAGAAAggatatcattttttttcacatttatttaatccaacttatattaatatttacaaatggatattaacacattacaaaatattttaagttaaactGTTCTATAGTTTAATGGATCTGCACCAACCCCAAAGCAGTGTAAACGGACTGTTGCCATGTGTCACTCTGGACCGAGAATGTTTACTGAGGTGTGTCGAGGTTTAGCAGCTTATCTGGGTCACAGGGTTGGGTAGGAGACACACCCTTTGTGCAAAGATAGAAAGAAAATCTCCAGTCGTGAAAATCAGACAGCGGAAAGCTTTAGACCCTCTGAATCTCACGTCTGGATCCGAATGACCTGATGAGCGAGTTTGCAGGCAAGAAACCACAAGGAGTTGAATCAAACCATTCCCCATGAAGTGGATTTAATAAATGATGATTAAATCAACTTACTGGCTTATAGAATATCCATTAAGATATTTTCTGCCTGATGCCTTTTCACCAAAAGCTTACATAAACAgacttaaataaacaaatggtaGACAAATATTTATCACTGCTAATACCTaactgaaatacatacaaaagacAGGCTCTTTAAATTCCAAAAACTATTAAATGCATCAGAGTACATAATATATCCTGCTATTAATGAAGTTAGCCTTGATTTTTAGGGGATTTTAAATTACCAATGTCAATTGCAGAATGGACATGACGTCATCTTTTGGAGGGAGATTTTGGGTTAAGCTAGTAAGTCTCTATATCGCTTTCATAGGACTGACttgatttaaaaccaaaacaccTTTAAACACGAGGTTATGGACTGACAGCCAGGTTTTCACAAATGTATCACTATTTCCCAGGATCTTGCTGATGCATAGAGATCCTGTGGCAACATGCTTGTTCAGTGTGTGCCATACAGTCCAATCCAAATACTGTTCAACAGTATAAGGGAAAAGATGATAGGAGGGTTGTATTGACAAATCCTGGGTCCCATCCGAGAAACAACAAACTGTTGCCCATCAGCTGTAAGAGCAGGGGCTTAAGAGCAGTCTAGCCAGACCTGGGGTCACAAACACACTtgcagttaaatacatttaaaaccaaaagttcactttttaatttcatcagctattgacagaataaaataaaatatatttaagatgtAAAATAATGGGAATACTACTCAATCATTTACAATGGCTATATTCGCCTGCATGACCCCTATTTATCAAGATGAGAGCTGCAAACCACACTTCAATATCAAGTGCCATGCCTTCAACTCCGTTGCAATGGTTTTAAATCTTCTCACACTGCTTTCAAGTATTACGGTATCACAATTTGTAAAATAAGgcacatgtttacatttttttttagtagtGAGGACATCACATTTGCATCTGCaggagcaaaaaataaataaatcacaatttgaaatacatttgattttacaatgcatttgaCCCCAATGTGGGTCTAACCAAATTAATTTATACCCCCATCGCAATGACCCTTTGGATTGCTTTTAAACAGTCAGGCAACAGGCTTCCAGAAGTTGGAAAGGCACAGTGTGataagagatagaaaaatactgCTTAATCTGACAAAATAGGAGAGGCACTTCCCAAAGCCTGCGTTTCAGCTTGTCGAGTTTCTCCGTCTTTTCTCCTCAAACACGTCAGCTTCTCTTGTAAACATAGCAGGCAGCTCCCCATGTATATGCGTATCTCCCTGTTATGTCTATTTATTTCGTATTTATTCAGAGCCGAGAGGCAGGCCATACTTATGTAAAGGATTTAGCTCTTCCATAATGAAATGACTCAGAAGATGAAGGGGGATTCTGATGCTTAATGAGTTATACATTAGGTGTTTCCCCATGTTCCACTGTGTCCATGTTATCCACTGTATGGGTAAACTAATTAGACCGGCAATTAGAACCACAAGGGGAAAATTGAAAGCTCTCAGTTCATCATGTGCAGTCTGTTTTTGCCTTGTATTTTCTTCCTGGGACAAAGTGCATTTGAGTGGGAATGAAGGACTGGAATATTGGCTGGAATATCAGGACTTAAACATGACGGAGAAGGCCAGCCATCTCTCCTAGCCCTTCCGAGGATTCACTGAAGAGGAAAAGATATTCAATAAGAAACACTCATTACCAATCACGAGTGAGGTTAGAAAAAGTGCACTgtagagagggaggcagagaatgtttaacattttgtttatcaACGGTGACTCTGATGTGTGCAGGTCTCCCTTTAAGAAAAATAACCAAGCTCAGTATATCCATTTTGTAGTGTAAACGACAGATTCTCATGTAAGGTTATCGGCTTTTCCCAGTGTCATGTTCCGACCTTACTTGCTGGCAGCTTTTAACAGGATTGGTGGCTACCAGAACCTGGAGGAGGTCTACCTGAAGGCAATCCCCTCTAAGATCATCCCCAACACCACGTGCCATTTGCCCCGCGCTGACGCCATGCACCTGTTCCGTGACCCCGTGGCTGGTGACCTCCCCTGGACCGGCATGACGTTTGGTCTCACCATCCTCGCCACGTGGTACTGGTGCACCGATCAGGCAAGTGCCCACCCCTGCATGTTTGGTCACCTGACCTCCACACCTCCTCAACCCCCATCCACTAGGCTACAGCAGAGGTGGAGGAGGCGGGGAAGTGCAAATCAATCAACAGTAGTCTAAAAGAGACCATTTCAGACTTAATATTGTCTCTCTTCTCAACCAGTTATCCTTGAGTGAGGACAAGGTCAAAATACTGGCCTGGAAGAAAACCCCCCCACAAAAGCAGggaataacaaaaaacatgaaacatccCTTAAAACGAGATTCAGCATCTGAAAGAAGAGATACCCTGTTCCTATGCATGAGGCGATTTGAGAAGTCCTCTGTGACCATCCAagtcctctttttttttttttttttttttttcttcctggagGGGGCTGGGTTACCACACAGTCTGGTTACTAGACAGCTTTGTGTCCTAGAGCAGTCTTTTTAGGAAGGGTGCCCATAGAGGCTGCAGGTAGCCTCCTCTGCAGGTGTTTGACCTGAGAGAGTTTGGCCAAGGAGATGCCAAAGGGAGTCTGGGAGCTGTTGACCAGTTGTTGCCTGTTGGGGGAGTTACGACCACTGGCTAATCTCCCTCGAGAGGTAGGGTAACTTGACTCAGCTTTGATATGGTTGAGGGCCTTGCTCTGCCAGTACTTGTGTCCCCCGATGACAGGCGCTGCAGTCTTGGTGGGCCGATGGTAGCTGCCAGGCTTGGCAATCACCACCCTCACCGGTCCCCGGCTTTGAGACTCCCGATCGGAGCGAATCGTGCTGACGGGAGATCTGGACATCACCTGATACAGCTGtgaaagagcaagagagaagaCTTGTGTTGGTCACTGTGTGCATTGTGAAAAAGCAAAGCTTATATAGACACTAGGCATGGGGATACTGATGTTCTTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146168 lncRNA upstream 15755 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 196315 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 236963 12278430 ~ 12278840 (+) True G116654
TU146113 lncRNA upstream 242307 12272589 ~ 12273496 (+) True G116653
TU146053 lncRNA upstream 373668 12139002 ~ 12142135 (+) True G116603
TU146185 lncRNA downstream 23664 12543545 ~ 12588656 (+) False AMCG00018498
TU146210 lncRNA downstream 180620 12700501 ~ 12700765 (+) True G116725
TU146213 lncRNA downstream 359705 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 385219 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 385219 12905100 ~ 12919130 (+) False G116765
AMCG00018493 mRNA upstream 15749 12489467 ~ 12500054 (+) True AMCG00018493
AMCG00018487 mRNA upstream 202989 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018483 mRNA upstream 245176 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018482 mRNA upstream 313707 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018481 mRNA upstream 328475 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018492 mRNA downstream 10677 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018498 mRNA downstream 60561 12580442 ~ 12611879 (+) True AMCG00018498
AMCG00018497 mRNA downstream 99479 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018500 mRNA downstream 194226 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018501 mRNA downstream 264810 12784691 ~ 12819143 (+) True AMCG00018501
TU146017 other upstream 545025 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2902885 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2951399 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3273988 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 3314217 9199657 ~ 9201586 (+) False AMCG00018358
TU146344 other downstream 733462 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 788017 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1500047 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1526378 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1621496 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile